{
    "type": "genome",
    "identifier": "GCA_903869145.1",
    "organism": "uncultured proteobacterium",
    "title": "uncultured proteobacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "BILS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_903869145.1",
        "bioproject": "PRJEB38681",
        "biosample": "SAMEA6947706",
        "wgs_master": "CAIPXW000000000.1",
        "refseq_category": "na",
        "taxid": "153809",
        "species_taxid": "153809",
        "organism_name": "uncultured proteobacterium",
        "infraspecific_name": "",
        "isolate": "MJ130617B_bin-119",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/20",
        "asm_name": "freshwater MAG --- MJ130617B_bin-119",
        "submitter": "BILS",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/869/145/GCA_903869145.1_freshwater_MAG_---_MJ130617B_bin-119",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-20",
    "dateModified": "2020-07-20",
    "datePublished": "2020-07-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured proteobacterium"
        ],
        "sample_taxid": [
            "153809"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Finland"
        ],
        "sample_host_location_id": [],
        "data_size": "2.412 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "8629769",
        "Number of Sequences": "88",
        "Longest Sequences (bp)": "498022",
        "N50 (bp)": "167549",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "62.4",
        "Number of CDSs": "7654",
        "Average Protein Length": "317.3",
        "Coding Ratio (%)": "84.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Paraburkholderia aromaticivorans",
                "strain": "strain=BN5",
                "accession": "GCA_002278075.1",
                "taxid": 2026199,
                "species_taxid": 2026199,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.4407,
                "matched_fragments": 2205,
                "total_fragments": 2830,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia xenovorans",
                "strain": "strain=LB400",
                "accession": "GCA_000756045.1",
                "taxid": 36873,
                "species_taxid": 36873,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.8904,
                "matched_fragments": 1964,
                "total_fragments": 2830,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia xenovorans",
                "strain": "strain=LB400",
                "accession": "GCA_000013645.1",
                "taxid": 36873,
                "species_taxid": 36873,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.8711,
                "matched_fragments": 1959,
                "total_fragments": 2830,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia phytofirmans",
                "strain": "strain=PsJN",
                "accession": "GCA_000020125.1",
                "taxid": 261302,
                "species_taxid": 261302,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.433,
                "matched_fragments": 1906,
                "total_fragments": 2830,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia dipogonis",
                "strain": "strain=ICMP 19430",
                "accession": "GCA_004402975.1",
                "taxid": 1211383,
                "species_taxid": 1211383,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.2118,
                "matched_fragments": 1954,
                "total_fragments": 2830,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia ultramafica",
                "strain": "strain=LMG 28614",
                "accession": "GCA_902859915.1",
                "taxid": 1544867,
                "species_taxid": 1544867,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.47,
                "matched_fragments": 1545,
                "total_fragments": 2830,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia nemoris",
                "strain": "strain=LMG 31836",
                "accession": "GCA_905221015.1",
                "taxid": 2793076,
                "species_taxid": 2793076,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.6254,
                "matched_fragments": 1813,
                "total_fragments": 2830,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia haematera",
                "strain": "strain=LMG 31837",
                "accession": "GCA_905220975.1",
                "taxid": 2793077,
                "species_taxid": 2793077,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.523,
                "matched_fragments": 1629,
                "total_fragments": 2830,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia domus",
                "strain": "strain=LMG 31832",
                "accession": "GCA_905220705.1",
                "taxid": 2793075,
                "species_taxid": 2793075,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.3081,
                "matched_fragments": 1761,
                "total_fragments": 2830,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia kirstenboschensis",
                "strain": "strain=KB15",
                "accession": "GCA_001636975.1",
                "taxid": 1245436,
                "species_taxid": 1245436,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.6732,
                "matched_fragments": 1323,
                "total_fragments": 2830,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia podalyriae",
                "strain": "strain=WC7.3b",
                "accession": "GCA_014397785.1",
                "taxid": 1938811,
                "species_taxid": 1938811,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.2249,
                "matched_fragments": 1476,
                "total_fragments": 2830,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900104795.1",
                "gtdb_species": "s__Paraburkholderia sp900104795",
                "ani": 98.4659,
                "matched_fragments": 2433,
                "total_fragments": 2830,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.49",
                "min_intra_species_ani": "98.44",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002278075.1",
                "gtdb_species": "s__Paraburkholderia aromaticivorans",
                "ani": 91.4329,
                "matched_fragments": 2206,
                "total_fragments": 2830,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_902459535.1",
                "gtdb_species": "s__Paraburkholderia sp000178415",
                "ani": 90.9225,
                "matched_fragments": 2009,
                "total_fragments": 2830,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.44",
                "min_intra_species_ani": "99.44",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000013645.1",
                "gtdb_species": "s__Paraburkholderia xenovorans",
                "ani": 90.8616,
                "matched_fragments": 1960,
                "total_fragments": 2830,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.29",
                "min_intra_species_ani": "98.59",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_004339745.1",
                "gtdb_species": "s__Paraburkholderia sp004339745",
                "ani": 89.9575,
                "matched_fragments": 1988,
                "total_fragments": 2830,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012689525.1",
                "gtdb_species": "s__Paraburkholderia aromaticivorans_A",
                "ani": 89.6935,
                "matched_fragments": 1990,
                "total_fragments": 2830,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000020125.1",
                "gtdb_species": "s__Paraburkholderia phytofirmans",
                "ani": 89.4279,
                "matched_fragments": 1907,
                "total_fragments": 2830,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.77",
                "min_intra_species_ani": "95.72",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_003002025.1",
                "gtdb_species": "s__Paraburkholderia sp003002025",
                "ani": 89.1085,
                "matched_fragments": 1915,
                "total_fragments": 2830,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.08",
                "min_intra_species_ani": "96.80",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_902859915.1",
                "gtdb_species": "s__Paraburkholderia ultramafica",
                "ani": 87.4588,
                "matched_fragments": 1547,
                "total_fragments": 2830,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Paraburkholderia",
        "s__Paraburkholderia sp900104795"
    ],
    "_genome_taxon": [
        "uncultured",
        "proteobacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Paraburkholderia",
        "s__Paraburkholderia sp900104795",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Burkholderiaceae",
        "Paraburkholderia",
        "Paraburkholderia",
        "sp900104795"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}