{ "type": "genome", "identifier": "GCA_903872425.1", "organism": "uncultured Opitutae bacterium", "title": "uncultured Opitutae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903872425.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6944545", "wgs_master": "CAIQKQ000000000.1", "refseq_category": "na", "taxid": "575426", "species_taxid": "575426", "organism_name": "uncultured Opitutae bacterium", "infraspecific_name": "", "isolate": "Umea1p1_bin-756", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/18", "asm_name": "freshwater MAG --- Umea1p1_bin-756", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/872/425/GCA_903872425.1_freshwater_MAG_---_Umea1p1_bin-756", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-18", "dateModified": "2020-07-18", "datePublished": "2020-07-18", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Opitutae bacterium" ], "sample_taxid": [ "575426" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "0.768 MB", "sample_ph_range": { "min": 632.0, "max": 632.0 }, "sample_temperature_range": { "min": 144.0, "max": 144.0 }, "completeness": 84.85, "contamination": 6.25, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2696487", "Number of Sequences": "304", "Longest Sequences (bp)": "98809", "N50 (bp)": "16411", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.1", "Number of CDSs": "2059", "Average Protein Length": "337.3", "Coding Ratio (%)": "77.3", "Number of rRNAs": "0", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rariglobus hedericola", "strain": "strain=53C-WASEF", "accession": "GCA_007559335.1", "taxid": 2597822, "species_taxid": 2597822, "relation_to_type": "type", "validated": true, "ani": 76.9878, "matched_fragments": 111, "total_fragments": 722, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cephaloticoccus primus", "strain": "strain=CAG34", "accession": "GCA_001580015.1", "taxid": 1548207, "species_taxid": 1548207, "relation_to_type": "type", "validated": true, "ani": 76.9418, "matched_fragments": 88, 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"below_threshold" }, { "organism_name": "Opitutus terrae", "strain": "strain=PB90-1", "accession": "GCA_000019965.1", "taxid": 107709, "species_taxid": 107709, "relation_to_type": "type", "validated": true, "ani": 76.7237, "matched_fragments": 124, "total_fragments": 722, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geminisphaera colitermitum", "strain": "strain=TAV2", "accession": "GCA_000171235.2", "taxid": 1148786, "species_taxid": 1148786, "relation_to_type": "type", "validated": true, "ani": 76.4623, "matched_fragments": 103, "total_fragments": 722, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 84.85, "contamination": 6.25, "strain_heterogeneity": 50.0 }, "gtdb_result": [ { "accession": "GCA_903872425.1", "gtdb_species": "s__CAIYUN01 sp903872425", "ani": 100.0, "matched_fragments": 712, "total_fragments": 722, "gtdb_taxonomy": 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