{
    "type": "genome",
    "identifier": "GCA_903872655.1",
    "organism": "uncultured Methylococcaceae bacterium",
    "title": "uncultured Methylococcaceae bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "BILS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_903872655.1",
        "bioproject": "PRJEB38681",
        "biosample": "SAMEA6947836",
        "wgs_master": "CAIQLO000000000.1",
        "refseq_category": "na",
        "taxid": "181674",
        "species_taxid": "181674",
        "organism_name": "uncultured Methylococcaceae bacterium",
        "infraspecific_name": "",
        "isolate": "VK4_bin-0998",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/18",
        "asm_name": "freshwater MAG --- VK4_bin-0998",
        "submitter": "BILS",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/872/655/GCA_903872655.1_freshwater_MAG_---_VK4_bin-0998",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-18",
    "dateModified": "2020-07-18",
    "datePublished": "2020-07-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Methylococcaceae bacterium"
        ],
        "sample_taxid": [
            "181674"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Finland"
        ],
        "sample_host_location_id": [],
        "data_size": "0.697 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": 76.0,
            "max": 76.0
        },
        "completeness": 58.44,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2403201",
        "Number of Sequences": "744",
        "Longest Sequences (bp)": "18064",
        "N50 (bp)": "3531",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "41.5",
        "Number of CDSs": "1703",
        "Average Protein Length": "270.2",
        "Coding Ratio (%)": "57.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "24",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 58.44,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_903839855.1",
                "gtdb_species": "s__KS41 sp903839855",
                "ani": 99.6995,
                "matched_fragments": 349,
                "total_fragments": 362,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__KS41",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.93",
                "min_intra_species_ani": "99.90",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_003584865.1",
                "gtdb_species": "s__KS41 sp003584865",
                "ani": 92.2331,
                "matched_fragments": 262,
                "total_fragments": 362,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__KS41",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.03",
                "min_intra_species_ani": "97.03",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCA_903859415.1",
                "gtdb_species": "s__KS41 sp903859415",
                "ani": 88.1534,
                "matched_fragments": 297,
                "total_fragments": 362,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__KS41",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.28",
                "min_intra_species_ani": "98.83",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_903866825.1",
                "gtdb_species": "s__KS41 sp903866825",
                "ani": 86.2125,
                "matched_fragments": 292,
                "total_fragments": 362,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__KS41",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.82",
                "min_intra_species_ani": "99.82",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903863905.1",
                "gtdb_species": "s__KS41 sp903863905",
                "ani": 80.4466,
                "matched_fragments": 153,
                "total_fragments": 362,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__KS41",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.63",
                "min_intra_species_ani": "99.29",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 33,
                "status": "-"
            },
            {
                "accession": "GCA_903873165.1",
                "gtdb_species": "s__KS41 sp903873165",
                "ani": 78.5234,
                "matched_fragments": 113,
                "total_fragments": 362,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__KS41",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.76",
                "min_intra_species_ani": "99.76",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903839795.1",
                "gtdb_species": "s__KS41 sp903839795",
                "ani": 77.9235,
                "matched_fragments": 93,
                "total_fragments": 362,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__KS41",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903873045.1",
                "gtdb_species": "s__KS41 sp903873045",
                "ani": 77.8792,
                "matched_fragments": 100,
                "total_fragments": 362,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__KS41",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903917345.1",
                "gtdb_species": "s__KS41 sp903917345",
                "ani": 77.8499,
                "matched_fragments": 87,
                "total_fragments": 362,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__KS41",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.26",
                "min_intra_species_ani": "98.86",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCA_903908165.1",
                "gtdb_species": "s__KS41 sp903908165",
                "ani": 77.4624,
                "matched_fragments": 63,
                "total_fragments": 362,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__KS41",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.39",
                "min_intra_species_ani": "98.42",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.71",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCA_903903365.1",
                "gtdb_species": "s__KS41 sp903903365",
                "ani": 77.357,
                "matched_fragments": 98,
                "total_fragments": 362,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__KS41",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.032,
        "cell_length": 0.184,
        "doubling_h": 1.929,
        "growth_tmp": 26.938,
        "optimum_tmp": 29.642,
        "optimum_ph": 7.321,
        "genome_size": 4860515.519,
        "gc_content": 53.393,
        "coding_genes": 4340.777,
        "rRNA16S_genes": 2.4,
        "tRNA_genes": 49.75,
        "gram_stain": 0.0,
        "sporulation": 0.066,
        "motility": 0.625,
        "range_salinity": 0.0,
        "facultative_respiration": 0.142,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.857,
        "mesophilic_range_tmp": 0.75,
        "thermophilic_range_tmp": 0.25,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.687,
        "coccus_cell_shape": 0.25,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.062,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Methylococcales",
        "f__Methylomonadaceae",
        "g__Methylobacter_C",
        "s__Methylobacter_C sp903839855"
    ],
    "_genome_taxon": [
        "uncultured",
        "Methylococcaceae",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Methylococcales",
        "f__Methylomonadaceae",
        "g__Methylobacter_C",
        "s__Methylobacter_C sp903839855",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Methylococcales",
        "Methylomonadaceae",
        "Methylobacter",
        "C",
        "Methylobacter",
        "C",
        "sp903839855"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}