{
    "type": "genome",
    "identifier": "GCA_903872685.1",
    "organism": "uncultured Acidimicrobiaceae bacterium",
    "title": "uncultured Acidimicrobiaceae bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "BILS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_903872685.1",
        "bioproject": "PRJEB38681",
        "biosample": "SAMEA6948470",
        "wgs_master": "CAIQLQ000000000.1",
        "refseq_category": "na",
        "taxid": "410722",
        "species_taxid": "410722",
        "organism_name": "uncultured Acidimicrobiaceae bacterium",
        "infraspecific_name": "",
        "isolate": "VK3_bin-0922",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/18",
        "asm_name": "freshwater MAG --- VK3_bin-0922",
        "submitter": "BILS",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/872/685/GCA_903872685.1_freshwater_MAG_---_VK3_bin-0922",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-18",
    "dateModified": "2020-07-18",
    "datePublished": "2020-07-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Acidimicrobiaceae bacterium"
        ],
        "sample_taxid": [
            "410722"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Finland"
        ],
        "sample_host_location_id": [],
        "data_size": "0.806 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": 98.0,
            "max": 98.0
        },
        "completeness": 91.19,
        "contamination": 0.46,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2889426",
        "Number of Sequences": "701",
        "Longest Sequences (bp)": "21879",
        "N50 (bp)": "4924",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "66.2",
        "Number of CDSs": "2115",
        "Average Protein Length": "291.6",
        "Coding Ratio (%)": "64.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "38",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Rhabdothermincola salaria",
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                "accession": "GCA_021246445.1",
                "taxid": 2903142,
                "species_taxid": 2903142,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 80,
                "total_fragments": 577,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhabdothermincola sediminis",
                "strain": "strain=SYSU G02662",
                "accession": "GCA_014805525.1",
                "taxid": 2751370,
                "species_taxid": 2751370,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2962,
                "matched_fragments": 51,
                "total_fragments": 577,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinoplanes atraurantiacus",
                "strain": "strain=CGMCC 4.6857",
                "accession": "GCA_900215205.1",
                "taxid": 1036182,
                "species_taxid": 1036182,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.2218,
                "matched_fragments": 53,
                "total_fragments": 577,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Longispora fulva",
                "strain": "strain=NBRC 105670",
                "accession": "GCA_016862835.1",
                "taxid": 619741,
                "species_taxid": 619741,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0502,
                "matched_fragments": 52,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Longispora fulva",
                "strain": "strain=DSM 45356",
                "accession": "GCA_015751905.1",
                "taxid": 619741,
                "species_taxid": 619741,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.014,
                "matched_fragments": 51,
                "total_fragments": 577,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.19,
            "contamination": 0.46,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCA_903906055.1",
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                "matched_fragments": 513,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__Bog-756",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.06",
                "min_intra_species_ani": "98.82",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 8,
                "status": "conclusive"
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            {
                "accession": "GCA_903849265.1",
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                "matched_fragments": 299,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__Bog-756",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.45",
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                "mean_intra_species_af": "0.70",
                "min_intra_species_af": "0.70",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_003153575.1",
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                "matched_fragments": 264,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__Bog-756",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.41",
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                "mean_intra_species_af": "0.75",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017883025.1",
                "gtdb_species": "s__Bog-756 sp017883025",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003164095.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__Bog-756",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003157945.1",
                "gtdb_species": "s__Bog-756 sp003157945",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__Bog-756",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_017883065.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__Bog-756",
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                "mean_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCA_003138855.1",
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                "num_clustered_genomes": 14,
                "status": "-"
            },
            {
                "accession": "GCA_017883135.1",
                "gtdb_species": "s__Bog-756 sp017883135",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_903900235.1",
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            {
                "accession": "GCA_903873395.1",
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            },
            {
                "accession": "GCA_015478655.1",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_017882995.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__UBA8190;g__Chersky-840",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.343,
        "doubling_h": null,
        "growth_tmp": 37.25,
        "optimum_tmp": 39.0,
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        "genome_size": 2693748.75,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": 0.25,
        "sporulation": 0.0,
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        "range_salinity": null,
        "facultative_respiration": 0.333,
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
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        "p__Actinomycetota",
        "c__Acidimicrobiia",
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    "_genome_taxon": [
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        "d__Bacteria",
        "p__Actinomycetota",
        "c__Acidimicrobiia",
        "o__Acidimicrobiales",
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        "g__Bog-756",
        "s__Bog-756 sp903906055",
        "Bacteria",
        "Actinomycetota",
        "Acidimicrobiia",
        "Acidimicrobiales",
        "RAAP-2",
        "Bog-756",
        "Bog-756",
        "sp903906055"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}