{ "type": "genome", "identifier": "GCA_903874385.1", "organism": "uncultured Geobacteraceae bacterium", "title": "uncultured Geobacteraceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903874385.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6947700", "wgs_master": "CAIQSA000000000.1", "refseq_category": "na", "taxid": "214033", "species_taxid": "214033", "organism_name": "uncultured Geobacteraceae bacterium", "infraspecific_name": "", "isolate": "MJ130617B_bin-026", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/19", "asm_name": "freshwater MAG --- MJ130617B_bin-026", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/874/385/GCA_903874385.1_freshwater_MAG_---_MJ130617B_bin-026", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-19", "dateModified": "2020-07-19", "datePublished": "2020-07-19", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Geobacteraceae bacterium" ], "sample_taxid": [ "214033" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "0.916 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.92, "contamination": 2.6, "strain_heterogeneity": 33.33, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3182692", "Number of Sequences": "237", "Longest Sequences (bp)": "52659", "N50 (bp)": "25683", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.1", "Number of CDSs": "2931", "Average Protein Length": "309.1", "Coding Ratio (%)": "85.4", "Number of rRNAs": "0", "Number of tRNAs": "49", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Oryzomonas sagensis", "strain": "strain=Red100", "accession": "GCA_008802355.1", "taxid": 2603857, "species_taxid": 2603857, "relation_to_type": "type", "validated": true, "ani": 77.2321, "matched_fragments": 177, "total_fragments": 939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oryzomonas rubra", "strain": "strain=Red88", "accession": "GCA_008369015.1", "taxid": 2509454, "species_taxid": 2509454, "relation_to_type": "type", "validated": true, "ani": 77.0446, "matched_fragments": 180, "total_fragments": 939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oryzomonas japonica", "strain": "strain=Red96", "accession": "GCA_008802365.1", "taxid": 2603858, "species_taxid": 2603858, "relation_to_type": "type", "validated": true, "ani": 77.0123, "matched_fragments": 174, "total_fragments": 939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelobacter propionicus", "strain": "strain=DSM 2379", "accession": "GCA_000015045.1", "taxid": 29543, "species_taxid": 29543, "relation_to_type": "type", "validated": true, "ani": 76.9249, "matched_fragments": 148, "total_fragments": 939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrifermentans pelophilum", "strain": "strain=DSM 12255", "accession": "GCA_018476885.1", "taxid": 60036, "species_taxid": 60036, "relation_to_type": "type", "validated": true, "ani": 76.8878, "matched_fragments": 79, "total_fragments": 939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Trichlorobacter thiogenes", "strain": "strain=ATCC BAA-34", "accession": "GCA_900167465.1", "taxid": 115783, "species_taxid": 115783, "relation_to_type": "type", "validated": true, "ani": 76.8705, "matched_fragments": 90, "total_fragments": 939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geobacter chapellei", "strain": "strain=DSM 13688", "accession": "GCA_018531195.1", "taxid": 44671, "species_taxid": 44671, "relation_to_type": "type", "validated": true, "ani": 76.593, "matched_fragments": 100, "total_fragments": 939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geobacter sulfurreducens", "strain": "strain=PCA", "accession": "GCA_000007985.2", "taxid": 35554, "species_taxid": 35554, "relation_to_type": "type", "validated": true, "ani": 76.4227, "matched_fragments": 65, "total_fragments": 939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geomonas agri", "strain": "strain=RG53", "accession": "GCA_020179605.1", "taxid": 2873702, "species_taxid": 2873702, "relation_to_type": "type", "validated": true, "ani": 76.3952, "matched_fragments": 80, "total_fragments": 939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geomonas limicola", "strain": "strain=Red745", "accession": "GCA_014193675.1", "taxid": 2740186, "species_taxid": 2740186, "relation_to_type": "type", "validated": true, "ani": 76.3941, "matched_fragments": 71, "total_fragments": 939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geomonas anaerohicana", "strain": "strain=Red421", "accession": "GCA_016458305.1", "taxid": 2798583, "species_taxid": 2798583, "relation_to_type": "type", "validated": true, "ani": 76.2595, "matched_fragments": 93, "total_fragments": 939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geomonas propionica", "strain": "strain=Red259", "accession": "GCA_016458235.1", "taxid": 2798582, "species_taxid": 2798582, "relation_to_type": "type", "validated": true, "ani": 76.2193, "matched_fragments": 81, "total_fragments": 939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geobacter soli", "strain": "strain=GSS01", "accession": "GCA_000816575.1", "taxid": 1510391, "species_taxid": 1510391, "relation_to_type": "type", "validated": true, "ani": 76.1826, "matched_fragments": 69, "total_fragments": 939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geobacter hydrogenophilus", "strain": "strain=DSM 13691", "accession": "GCA_018501225.1", "taxid": 40983, "species_taxid": 40983, "relation_to_type": "type", "validated": true, "ani": 75.9972, "matched_fragments": 91, "total_fragments": 939, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 97.92, "contamination": 2.6, "strain_heterogeneity": 33.33 }, "gtdb_result": [ { "accession": "GCA_903852495.1", "gtdb_species": "s__JACRCG01 sp903852495", 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