{ "type": "genome", "identifier": "GCA_903874405.1", "organism": "uncultured Chlorobiaceae bacterium", "title": "uncultured Chlorobiaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903874405.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6948232", "wgs_master": "CAIQSF000000000.1", "refseq_category": "na", "taxid": "243904", "species_taxid": "243904", "organism_name": "uncultured Chlorobiaceae bacterium", "infraspecific_name": "", "isolate": "MJ130617A_bin-035", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/18", "asm_name": "freshwater MAG --- MJ130617A_bin-035", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/874/405/GCA_903874405.1_freshwater_MAG_---_MJ130617A_bin-035", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-18", "dateModified": "2020-07-18", "datePublished": "2020-07-18", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Chlorobiaceae bacterium" ], "sample_taxid": [ "243904" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "0.718 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2492281", "Number of Sequences": "120", "Longest Sequences (bp)": "149976", "N50 (bp)": "43725", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.0", "Number of CDSs": "2157", "Average Protein Length": "324.4", "Coding Ratio (%)": "84.2", "Number of rRNAs": "0", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pelodictyon phaeoclathratiforme", "strain": "strain=BU-1", "accession": "GCA_000020645.1", "taxid": 34090, "species_taxid": 34090, "relation_to_type": "type", "validated": true, "ani": 77.9542, "matched_fragments": 222, "total_fragments": 773, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chlorobium ferrooxidans", "strain": "strain=DSM 13031", "accession": "GCA_000168715.1", "taxid": 84205, "species_taxid": 84205, "relation_to_type": "type", "validated": true, "ani": 77.3082, "matched_fragments": 157, 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"id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }