{ "type": "genome", "identifier": "GCA_903874765.1", "organism": "uncultured Bradyrhizobiaceae bacterium", "title": "uncultured Bradyrhizobiaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903874765.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6949837", "wgs_master": "CAIQTQ000000000.1", "refseq_category": "na", "taxid": "181009", "species_taxid": "181009", "organism_name": "uncultured Bradyrhizobiaceae bacterium", "infraspecific_name": "", "isolate": "AM-lipid-02-D4_bin-0524", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/18", "asm_name": "freshwater MAG --- AM-lipid-02-D4_bin-0524", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/874/765/GCA_903874765.1_freshwater_MAG_---_AM-lipid-02-D4_bin-0524", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-18", "dateModified": "2020-07-18", "datePublished": "2020-07-18", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Bradyrhizobiaceae bacterium" ], "sample_taxid": [ "181009" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "0.798 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 84.0, "max": 84.0 }, "completeness": 59.08, "contamination": 12.5, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2780535", "Number of Sequences": "875", "Longest Sequences (bp)": "16859", "N50 (bp)": "3500", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.2", "Number of CDSs": "2041", "Average Protein Length": "261.5", "Coding Ratio (%)": "57.6", "Number of rRNAs": "0", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Afipia massiliensis", "strain": "strain=DSM 17498", "accession": "GCA_014203115.1", "taxid": 211460, "species_taxid": 211460, "relation_to_type": "type", "validated": true, "ani": 79.2402, "matched_fragments": 243, "total_fragments": 430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Afipia birgiae", "strain": "strain=34632", "accession": "GCA_000308295.2", "taxid": 151414, "species_taxid": 151414, "relation_to_type": "type", "validated": true, "ani": 79.214, "matched_fragments": 236, "total_fragments": 430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Afipia broomeae", "strain": "strain=ATCC 49717", "accession": "GCA_000314675.2", "taxid": 56946, "species_taxid": 56946, "relation_to_type": "type", "validated": true, "ani": 79.1805, "matched_fragments": 228, "total_fragments": 430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Afipia clevelandensis", "strain": "strain=ATCC 49720", "accession": "GCA_000336555.1", "taxid": 1034, "species_taxid": 1034, "relation_to_type": "type", "validated": true, "ani": 79.0661, "matched_fragments": 222, "total_fragments": 430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium sediminis", "strain": "strain=S2-20-1", "accession": "GCA_018736085.1", "taxid": 2840469, "species_taxid": 2840469, "relation_to_type": "type", "validated": true, "ani": 78.5002, "matched_fragments": 155, "total_fragments": 430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Afipia carboxidovorans", "strain": "strain=OM5; ATCC 49405", "accession": "GCA_000021365.1", "taxid": 40137, "species_taxid": 40137, "relation_to_type": "type", "validated": true, "ani": 78.2747, "matched_fragments": 137, "total_fragments": 430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium amphicarpaeae", "strain": "strain=39S1MB", "accession": "GCA_002266435.2", "taxid": 1404768, "species_taxid": 1404768, "relation_to_type": "type", "validated": true, "ani": 78.2597, "matched_fragments": 143, "total_fragments": 430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium viridifuturi", "strain": "strain=SEMIA 690", "accession": "GCA_001238275.1", "taxid": 1654716, "species_taxid": 1654716, "relation_to_type": "type", "validated": true, "ani": 78.2424, "matched_fragments": 148, "total_fragments": 430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Afipia carboxidovorans", "strain": "strain=OM5", "accession": "GCA_000218565.1", "taxid": 40137, "species_taxid": 40137, "relation_to_type": "type", "validated": true, "ani": 78.2254, "matched_fragments": 137, "total_fragments": 430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium mercantei", "strain": "strain=SEMIA 6399", "accession": "GCA_001982635.1", "taxid": 1904807, "species_taxid": 1904807, "relation_to_type": "type", "validated": true, "ani": 78.0052, "matched_fragments": 155, "total_fragments": 430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitrobacter hamburgensis", "strain": "strain=X14", "accession": "GCA_000013885.1", "taxid": 912, "species_taxid": 912, "relation_to_type": "type", "validated": true, "ani": 77.951, "matched_fragments": 113, "total_fragments": 430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium lablabi", "strain": "strain=CCBAU 23086", "accession": "GCA_001440475.1", "taxid": 722472, "species_taxid": 722472, "relation_to_type": "suspected-type", "validated": true, "ani": 77.9288, "matched_fragments": 160, "total_fragments": 430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium cajani", "strain": "strain=1010", "accession": "GCA_009759665.1", "taxid": 1928661, "species_taxid": 1928661, "relation_to_type": "type", "validated": true, "ani": 77.9108, "matched_fragments": 143, "total_fragments": 430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium valentinum", "strain": "strain=LmjM3", "accession": "GCA_001440405.1", "taxid": 1518501, "species_taxid": 1518501, "relation_to_type": "type", "validated": true, "ani": 77.9098, "matched_fragments": 147, "total_fragments": 430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium aeschynomenes", "strain": "strain=83002", "accession": "GCA_013178945.1", "taxid": 2734909, 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