{
    "type": "genome",
    "identifier": "GCA_903874905.1",
    "organism": "uncultured Nitrosomonadales bacterium",
    "title": "uncultured Nitrosomonadales bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "BILS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_903874905.1",
        "bioproject": "PRJEB38681",
        "biosample": "SAMEA6951417",
        "wgs_master": "CAIQUB000000000.1",
        "refseq_category": "na",
        "taxid": "239992",
        "species_taxid": "239992",
        "organism_name": "uncultured Nitrosomonadales bacterium",
        "infraspecific_name": "",
        "isolate": "MJ120813B_bin-230",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/18",
        "asm_name": "freshwater MAG --- MJ120813B_bin-230",
        "submitter": "BILS",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/874/905/GCA_903874905.1_freshwater_MAG_---_MJ120813B_bin-230",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-18",
    "dateModified": "2020-07-18",
    "datePublished": "2020-07-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Nitrosomonadales bacterium"
        ],
        "sample_taxid": [
            "239992"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Finland"
        ],
        "sample_host_location_id": [],
        "data_size": "0.702 MB",
        "sample_ph_range": {
            "min": 565.0,
            "max": 565.0
        },
        "sample_temperature_range": {
            "min": 628.0,
            "max": 628.0
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2441109",
        "Number of Sequences": "188",
        "Longest Sequences (bp)": "73950",
        "N50 (bp)": "20275",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "52.2",
        "Number of CDSs": "2224",
        "Average Protein Length": "303.3",
        "Coding Ratio (%)": "82.9",
        "Number of rRNAs": "1",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Gallionella capsiferriformans",
                "strain": "strain=ES-2",
                "accession": "GCA_000145255.1",
                "taxid": 370405,
                "species_taxid": 370405,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4204,
                "matched_fragments": 279,
                "total_fragments": 717,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ferrigenium kumadai",
                "strain": "strain=An22",
                "accession": "GCA_018324385.1",
                "taxid": 1682490,
                "species_taxid": 1682490,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4216,
                "matched_fragments": 134,
                "total_fragments": 717,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ferriphaselus amnicola",
                "strain": "strain=OYT1",
                "accession": "GCA_000974685.2",
                "taxid": 1188319,
                "species_taxid": 1188319,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5034,
                "matched_fragments": 88,
                "total_fragments": 717,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_903885165.1",
                "gtdb_species": "s__Gallionella sp903885165",
                "ani": 99.7466,
                "matched_fragments": 661,
                "total_fragments": 717,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__Gallionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.76",
                "min_intra_species_ani": "99.35",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 60,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000145255.1",
                "gtdb_species": "s__Gallionella capsiferriformans",
                "ani": 79.4204,
                "matched_fragments": 279,
                "total_fragments": 717,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__Gallionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001801025.1",
                "gtdb_species": "s__Gallionella sp001801025",
                "ani": 79.3398,
                "matched_fragments": 284,
                "total_fragments": 717,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__Gallionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.91",
                "min_intra_species_ani": "99.81",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002381565.1",
                "gtdb_species": "s__Gallionella sp002381565",
                "ani": 78.6705,
                "matched_fragments": 290,
                "total_fragments": 717,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__Gallionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.74",
                "min_intra_species_ani": "97.66",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_903915035.1",
                "gtdb_species": "s__Gallionella sp903915035",
                "ani": 78.2088,
                "matched_fragments": 236,
                "total_fragments": 717,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__Gallionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.81",
                "min_intra_species_ani": "99.81",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017880865.1",
                "gtdb_species": "s__Gallionella sp017880865",
                "ani": 77.3626,
                "matched_fragments": 171,
                "total_fragments": 717,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__Gallionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001801105.1",
                "gtdb_species": "s__Gallionella sp001801105",
                "ani": 77.2149,
                "matched_fragments": 123,
                "total_fragments": 717,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__Gallionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016183575.1",
                "gtdb_species": "s__Gallionella sp016183575",
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                "matched_fragments": 94,
                "total_fragments": 717,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__Gallionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002403995.1",
                "gtdb_species": "s__Gallionella sp002403995",
                "ani": 77.1327,
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                "total_fragments": 717,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__Gallionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018814405.1",
                "gtdb_species": "s__Sideroxydans sp018814405",
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                "matched_fragments": 108,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__Sideroxydans",
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                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_016235045.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__Sideroxydans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018819205.1",
                "gtdb_species": "s__Sideroxydans sp018819205",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__Sideroxydans",
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                "mean_intra_species_ani": "99.83",
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                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.276,
        "cell_length": 0.132,
        "doubling_h": 0.604,
        "growth_tmp": 28.323,
        "optimum_tmp": 28.855,
        "optimum_ph": 7.384,
        "genome_size": 2915538.725,
        "gc_content": 49.197,
        "coding_genes": 2678.366,
        "rRNA16S_genes": 1.437,
        "tRNA_genes": 42.375,
        "gram_stain": 0.029,
        "sporulation": 0.117,
        "motility": 0.812,
        "range_salinity": null,
        "facultative_respiration": 0.085,
        "anaerobic_respiration": 0.057,
        "aerobic_respiration": 0.857,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.736,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.105,
        "vibrio_cell_shape": 0.157,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Gallionellaceae",
        "g__Gallionella",
        "s__Gallionella sp903885165"
    ],
    "_genome_taxon": [
        "uncultured",
        "Nitrosomonadales",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Gallionellaceae",
        "g__Gallionella",
        "s__Gallionella sp903885165",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Gallionellaceae",
        "Gallionella",
        "Gallionella",
        "sp903885165"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}