{ "tc_result": [ { "organism_name": "Mycolicibacterium fluoranthenivorans", "strain": "strain=DSM 44556", "accession": "GCA_011758805.1", "taxid": 258505, "species_taxid": 258505, "relation_to_type": "type", "validated": true, "ani": 96.066, "matched_fragments": 622, "total_fragments": 705, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycolicibacterium cosmeticum", "strain": "strain=DSM 44829", "accession": "GCA_005670675.1", "taxid": 258533, "species_taxid": 258533, "relation_to_type": "type", "validated": true, "ani": 84.5419, "matched_fragments": 549, "total_fragments": 705, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium cosmeticum", "strain": "strain=DSM 44829", "accession": "GCA_000613185.1", "taxid": 258533, "species_taxid": 258533, "relation_to_type": "type", "validated": true, "ani": 84.5233, "matched_fragments": 548, "total_fragments": 705, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium canariasense", "strain": "strain=CCUG 47953", "accession": "GCA_002101555.1", "taxid": 228230, "species_taxid": 228230, "relation_to_type": "type", "validated": true, "ani": 84.4181, "matched_fragments": 517, "total_fragments": 705, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium canariasense", "strain": "strain=JCM15298", "accession": "GCA_001570445.1", "taxid": 228230, "species_taxid": 228230, "relation_to_type": "type", "validated": true, "ani": 84.3678, "matched_fragments": 521, "total_fragments": 705, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium bacteremicum", "strain": "strain=DSM 45578", "accession": "GCA_002086115.1", "taxid": 564198, "species_taxid": 564198, "relation_to_type": "type", "validated": true, "ani": 80.9056, "matched_fragments": 421, "total_fragments": 705, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium boenickei", "strain": "strain=JCM 15653", "accession": "GCA_010731295.1", "taxid": 146017, "species_taxid": 146017, "relation_to_type": "type", "validated": true, "ani": 80.1066, "matched_fragments": 382, "total_fragments": 705, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium phlei", "strain": "strain=DSM 43239 = CCUG 21000", "accession": "GCA_001582015.1", "taxid": 1771, "species_taxid": 1771, "relation_to_type": "type", "validated": true, "ani": 80.0352, "matched_fragments": 361, "total_fragments": 705, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium llatzerense", "strain": "strain=MG13", "accession": "GCA_025331195.1", "taxid": 280871, "species_taxid": 280871, "relation_to_type": "type", "validated": true, "ani": 79.7654, "matched_fragments": 326, "total_fragments": 705, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fallax", "strain": "strain=JCM 6405", "accession": "GCA_010726955.1", "taxid": 1793, "species_taxid": 1793, "relation_to_type": "type", "validated": true, "ani": 79.6003, "matched_fragments": 278, "total_fragments": 705, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium pallens", "strain": "strain=JCM 16370", "accession": "GCA_019456675.1", "taxid": 370524, "species_taxid": 370524, "relation_to_type": "type", "validated": true, "ani": 79.4345, "matched_fragments": 315, "total_fragments": 705, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium crocinum", "strain": "strain=JCM 16369", "accession": "GCA_022370635.3", "taxid": 388459, "species_taxid": 388459, "relation_to_type": "type", "validated": true, "ani": 79.2424, "matched_fragments": 331, "total_fragments": 705, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium mengxianglii", "strain": "strain=Z-34", "accession": "GCA_015710575.2", "taxid": 2736649, "species_taxid": 2736649, "relation_to_type": "type", "validated": true, "ani": 79.2197, "matched_fragments": 295, "total_fragments": 705, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 63.18, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_011758805.1", "gtdb_species": "s__Mycobacterium fluoranthenivorans", "ani": 96.066, "matched_fragments": 622, "total_fragments": 705, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.15", "min_intra_species_ani": "95.95", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.84", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCA_016197365.1", "gtdb_species": "s__Mycobacterium cosmeticum_A", "ani": 85.7064, "matched_fragments": 494, "total_fragments": 705, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000613185.1", "gtdb_species": "s__Mycobacterium cosmeticum", "ani": 84.5628, "matched_fragments": 545, "total_fragments": 705, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.89", "min_intra_species_ani": "98.33", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_002101555.1", "gtdb_species": "s__Mycobacterium canariasense", "ani": 84.4374, "matched_fragments": 516, "total_fragments": 705, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900078775.1", "gtdb_species": "s__Mycobacterium aurum_A", "ani": 81.5222, "matched_fragments": 428, "total_fragments": 705, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001907655.1", "gtdb_species": "s__Mycobacterium diernhoferi", "ani": 81.3383, "matched_fragments": 432, "total_fragments": 705, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.94", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001644575.1", "gtdb_species": "s__Mycobacterium sp001644575", "ani": 81.3294, "matched_fragments": 428, "total_fragments": 705, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.69", "min_intra_species_ani": "99.69", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002086115.1", "gtdb_species": "s__Mycobacterium bacteremicum", "ani": 80.9061, "matched_fragments": 421, "total_fragments": 705, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000317305.3", "gtdb_species": "s__Mycobacterium neoaurum_A", "ani": 80.4801, "matched_fragments": 392, "total_fragments": 705, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.30", "min_intra_species_ani": "95.79", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.90", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_004762045.1", "gtdb_species": "s__Mycobacterium sp004762045", "ani": 80.1144, "matched_fragments": 362, "total_fragments": 705, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010731295.1", "gtdb_species": "s__Mycobacterium boenickei", "ani": 80.1064, "matched_fragments": 382, "total_fragments": 705, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.96", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_017876775.1", "gtdb_species": "s__Mycobacterium lutetiense", "ani": 79.7453, "matched_fragments": 355, "total_fragments": 705, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002102345.1", "gtdb_species": "s__Mycobacterium peregrinum", "ani": 79.6374, "matched_fragments": 370, "total_fragments": 705, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.04", "min_intra_species_ani": "98.27", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_010729665.1", "gtdb_species": "s__Mycobacterium madagascariense", "ani": 79.2363, "matched_fragments": 339, "total_fragments": 705, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002798385.1", "gtdb_species": "s__Mycobacterium goodii", "ani": 79.2247, "matched_fragments": 354, "total_fragments": 705, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.16", "min_intra_species_ani": "99.12", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 7, "status": "-" } ] }