{ "type": "genome", "identifier": "GCA_903883025.1", "organism": "uncultured Desulfarculaceae bacterium", "title": "uncultured Desulfarculaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903883025.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6955652", "wgs_master": "CAIRZH000000000.1", "refseq_category": "na", "taxid": "860782", "species_taxid": "860782", "organism_name": "uncultured Desulfarculaceae bacterium", "infraspecific_name": "", "isolate": "LaPlata_bin-3679", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/18", "asm_name": "freshwater MAG --- LaPlata_bin-3679", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/883/025/GCA_903883025.1_freshwater_MAG_---_LaPlata_bin-3679", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-18", "dateModified": "2020-07-18", "datePublished": "2020-07-18", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Desulfarculaceae bacterium" ], "sample_taxid": [ "860782" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Puerto Rico" ], "sample_host_location_id": [], "data_size": "0.716 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 74.24, "contamination": 0.52, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2587638", "Number of Sequences": "955", "Longest Sequences (bp)": "8812", "N50 (bp)": "2824", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.8", "Number of CDSs": "1550", "Average Protein Length": "278.6", "Coding Ratio (%)": "50.1", "Number of rRNAs": "0", "Number of tRNAs": "20", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 74.24, "contamination": 0.52, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002011835.1", "gtdb_species": "s__JdFR-95 sp002011835", "ani": 76.7686, "matched_fragments": 54, "total_fragments": 285, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfarculia;o__Desulfarculales;f__Desulfarculaceae;g__JdFR-95", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016208115.1", "gtdb_species": "s__JACRDC01 sp016208115", "ani": 76.3742, "matched_fragments": 81, "total_fragments": 285, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfarculia;o__Desulfarculales;f__Desulfarculaceae;g__JACRDC01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018896025.1", "gtdb_species": "s__SURF-10 sp018896025", "ani": 76.1364, "matched_fragments": 54, "total_fragments": 285, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfarculia;o__Desulfarculales;f__Desulfarculaceae;g__SURF-10", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.58", "min_intra_species_ani": "98.82", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_018819925.1", "gtdb_species": "s__SURF-10 sp018819925", "ani": 76.0068, "matched_fragments": 55, "total_fragments": 285, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfarculia;o__Desulfarculales;f__Desulfarculaceae;g__SURF-10", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.87", "min_intra_species_ani": "99.83", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_016718565.1", "gtdb_species": "s__JADKCZ01 sp016718565", "ani": 75.1613, "matched_fragments": 59, "total_fragments": 285, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Anaeromyxobacteraceae;g__JADKCZ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.81", "min_intra_species_ani": "99.81", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 32.333, "optimum_tmp": null, "optimum_ph": null, "genome_size": 4651186.2, "gc_content": 61.635, "coding_genes": 3241.667, "rRNA16S_genes": 1.0, "tRNA_genes": 46.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 1.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Desulfobacterota", "c__Desulfarculia", "o__", "f__", "g__", "s__" ], "_genome_taxon": [ "uncultured", "Desulfarculaceae", "bacterium", "d__Bacteria", "p__Desulfobacterota", "c__Desulfarculia", "o__", "f__", "g__", "s__", "Bacteria", "Desulfobacterota", "Desulfarculia", "o", "", "", "f", "", "", "g", "", "", "s", "", "" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }