{ "type": "genome", "identifier": "GCA_903883075.1", "organism": "uncultured Actinomycetes bacterium", "title": "uncultured Actinomycetes bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903883075.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6956471", "wgs_master": "CAIRZN000000000.1", "refseq_category": "na", "taxid": "152507", "species_taxid": "152507", "organism_name": "uncultured Actinomycetes bacterium", "infraspecific_name": "", "isolate": "Kiruna3_bin-1435", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/17", "asm_name": "freshwater MAG --- Kiruna3_bin-1435", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/883/075/GCA_903883075.1_freshwater_MAG_---_Kiruna3_bin-1435", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-17", "dateModified": "2020-07-17", "datePublished": "2020-07-17", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Actinomycetes bacterium" ], "sample_taxid": [ "152507" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "0.371 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 77.21, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1284921", "Number of Sequences": "260", "Longest Sequences (bp)": "30368", "N50 (bp)": "5922", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.7", "Number of CDSs": "1050", "Average Protein Length": "294.5", "Coding Ratio (%)": "72.2", "Number of rRNAs": "0", "Number of tRNAs": "29", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 77.21, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_903921405.1", "gtdb_species": "s__Planktophila sp903921405", "ani": 99.0482, "matched_fragments": 258, "total_fragments": 288, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.46", "min_intra_species_ani": "97.48", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.78", "num_clustered_genomes": 9, "status": "conclusive" }, { "accession": "GCA_007279945.1", "gtdb_species": "s__Planktophila sp007279945", "ani": 83.6629, "matched_fragments": 195, "total_fragments": 288, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009701185.1", "gtdb_species": "s__Planktophila sp009701185", "ani": 81.6497, "matched_fragments": 173, "total_fragments": 288, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.12", "min_intra_species_ani": "98.23", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.76", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_009702525.1", "gtdb_species": "s__Planktophila sp009702525", "ani": 81.531, "matched_fragments": 167, "total_fragments": 288, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.67", "min_intra_species_ani": "99.67", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903832395.1", "gtdb_species": "s__Planktophila sp903832395", "ani": 79.8151, "matched_fragments": 117, "total_fragments": 288, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.52", "min_intra_species_ani": "97.23", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.79", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_002284895.1", "gtdb_species": "s__Planktophila sp002284895", "ani": 79.4511, "matched_fragments": 124, "total_fragments": 288, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009698675.1", "gtdb_species": "s__Planktophila sp009698675", "ani": 79.2582, "matched_fragments": 110, "total_fragments": 288, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.92", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.85", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_015660815.1", "gtdb_species": "s__Planktophila sp015660815", "ani": 79.1775, "matched_fragments": 124, "total_fragments": 288, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903918325.1", "gtdb_species": "s__Planktophila sp903918325", "ani": 78.8592, "matched_fragments": 95, "total_fragments": 288, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.89", "min_intra_species_ani": "98.77", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.78", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_009702835.1", "gtdb_species": "s__Planktophila sp009702835", "ani": 78.697, "matched_fragments": 103, "total_fragments": 288, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.51", "min_intra_species_ani": "97.96", "mean_intra_species_af": "0.78", "min_intra_species_af": "0.76", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_009702845.1", "gtdb_species": "s__Planktophila sp009702845", "ani": 78.6127, "matched_fragments": 81, "total_fragments": 288, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009699645.1", "gtdb_species": "s__Planktophila sp009699645", "ani": 78.1701, "matched_fragments": 95, "total_fragments": 288, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009705165.1", "gtdb_species": "s__Planktophila sp009705165", "ani": 77.9678, "matched_fragments": 62, "total_fragments": 288, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903852815.1", "gtdb_species": "s__Planktophila sp903852815", "ani": 77.8554, "matched_fragments": 96, "total_fragments": 288, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.74", "min_intra_species_ani": "99.65", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Actinomycetota", "c__Actinomycetes", "o__Nanopelagicales", "f__Nanopelagicaceae", "g__Planktophila", "s__Planktophila sp903921405" ], "_genome_taxon": [ "uncultured", "Actinomycetes", "bacterium", "d__Bacteria", "p__Actinomycetota", "c__Actinomycetes", "o__Nanopelagicales", "f__Nanopelagicaceae", "g__Planktophila", "s__Planktophila sp903921405", "Bacteria", "Actinomycetota", "Actinomycetes", "Nanopelagicales", "Nanopelagicaceae", "Planktophila", "Planktophila", "sp903921405" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }