{
    "type": "genome",
    "identifier": "GCA_903883435.1",
    "organism": "Synechococcus lacustris",
    "title": "Synechococcus lacustris",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "BILS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_903883435.1",
        "bioproject": "PRJEB38681",
        "biosample": "SAMEA6948088",
        "wgs_master": "CAISAU000000000.1",
        "refseq_category": "na",
        "taxid": "2116544",
        "species_taxid": "2116544",
        "organism_name": "Synechococcus lacustris",
        "infraspecific_name": "",
        "isolate": "Ja1-D2_bin-0710",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/18",
        "asm_name": "freshwater MAG --- Ja1-D2_bin-0710",
        "submitter": "BILS",
        "gbrs_paired_asm": "GCF_903883435.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/883/435/GCA_903883435.1_freshwater_MAG_---_Ja1-D2_bin-0710",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-18",
    "dateModified": "2020-07-18",
    "datePublished": "2020-07-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Synechococcus lacustris"
        ],
        "sample_taxid": [
            "2116544"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Sweden"
        ],
        "sample_host_location_id": [],
        "data_size": "0.632 MB",
        "sample_ph_range": {
            "min": 68.0,
            "max": 68.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 4.69,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2262262",
        "Number of Sequences": "245",
        "Longest Sequences (bp)": "67136",
        "N50 (bp)": "13286",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "62.6",
        "Number of CDSs": "2190",
        "Average Protein Length": "278.4",
        "Coding Ratio (%)": "80.8",
        "Number of rRNAs": "0",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Synechococcus lacustris",
                "strain": "strain=Tous",
                "accession": "GCA_003011125.1",
                "taxid": 2116544,
                "species_taxid": 2116544,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.9313,
                "matched_fragments": 172,
                "total_fragments": 617,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parasynechococcus marenigrum",
                "strain": "strain=WH 8102",
                "accession": "GCA_000195975.1",
                "taxid": 2881428,
                "species_taxid": 2881428,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4018,
                "matched_fragments": 159,
                "total_fragments": 617,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 4.69,
            "strain_heterogeneity": 100.0
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        "gtdb_result": [
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                "accession": "GCA_903943975.1",
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                "total_fragments": 617,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Synechococcus_D",
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                "min_intra_species_ani": "99.37",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 31,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003003925.1",
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                "total_fragments": 617,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Cyanobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.57",
                "min_intra_species_ani": "95.57",
                "mean_intra_species_af": "0.88",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900088535.1",
                "gtdb_species": "s__NIES-981 sp900088535",
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                "matched_fragments": 262,
                "total_fragments": 617,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__NIES-981",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903871775.1",
                "gtdb_species": "s__CAIQIA01 sp903871775",
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                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__CAIQIA01",
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                "num_clustered_genomes": 7,
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            },
            {
                "accession": "GCF_019104765.1",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            {
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                "mean_intra_species_ani": "N/A",
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            },
            {
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            },
            {
                "accession": "GCA_016882315.1",
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            },
            {
                "accession": "GCF_000316515.1",
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            },
            {
                "accession": "GCF_019038415.1",
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            },
            {
                "accession": "GCA_000063525.1",
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                "accession": "GCA_014191755.1",
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                "mean_intra_species_ani": "N/A",
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                "accession": "GCA_002470305.1",
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            {
                "accession": "GCF_014217855.1",
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
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        "range_salinity": null,
        "facultative_respiration": null,
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": null,
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    },
    "_gtdb_taxon": [
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        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
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        "f__Cyanobiaceae",
        "g__Synechococcus_D",
        "s__Synechococcus_D lacustris_A"
    ],
    "_genome_taxon": [
        "Synechococcus",
        "lacustris",
        "d__Bacteria",
        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
        "o__PCC-6307",
        "f__Cyanobiaceae",
        "g__Synechococcus_D",
        "s__Synechococcus_D lacustris_A",
        "Bacteria",
        "Cyanobacteriota",
        "Cyanobacteriia",
        "PCC-6307",
        "Cyanobiaceae",
        "Synechococcus",
        "D",
        "Synechococcus",
        "D",
        "lacustris",
        "A"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}