{ "type": "genome", "identifier": "GCA_903883475.1", "organism": "uncultured Burkholderiales bacterium", "title": "uncultured Burkholderiales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903883475.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6945110", "wgs_master": "CAISBD000000000.1", "refseq_category": "na", "taxid": "208544", "species_taxid": "208544", "organism_name": "uncultured Burkholderiales bacterium", "infraspecific_name": "", "isolate": "C4_bin-831", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/18", "asm_name": "freshwater MAG --- C4_bin-831", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/883/475/GCA_903883475.1_freshwater_MAG_---_C4_bin-831", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-18", "dateModified": "2020-07-18", "datePublished": "2020-07-18", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Burkholderiales bacterium" ], "sample_taxid": [ "208544" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada" ], "sample_host_location_id": [], "data_size": "0.657 MB", "sample_ph_range": { "min": 516.0, "max": 516.0 }, "sample_temperature_range": { "min": 87.0, "max": 87.0 }, "completeness": 49.31, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2253917", "Number of Sequences": "699", "Longest Sequences (bp)": "15063", "N50 (bp)": "3593", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.0", "Number of CDSs": "1500", "Average Protein Length": "288.1", "Coding Ratio (%)": "57.5", "Number of rRNAs": "0", "Number of tRNAs": "17", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 49.31, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903896615.1", "gtdb_species": "s__Limnohabitans sp903896615", "ani": 99.552, "matched_fragments": 319, "total_fragments": 336, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.47", "min_intra_species_ani": "99.16", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_903828695.1", "gtdb_species": "s__Limnohabitans sp903828695", "ani": 78.9718, "matched_fragments": 130, "total_fragments": 336, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.66", "min_intra_species_ani": "99.42", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.82", "num_clustered_genomes": 15, "status": "-" }, { "accession": "GCA_903876885.1", "gtdb_species": "s__Limnohabitans sp903876885", "ani": 78.1803, "matched_fragments": 69, "total_fragments": 336, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903949285.1", "gtdb_species": "s__Limnohabitans sp903949285", "ani": 78.0471, "matched_fragments": 123, "total_fragments": 336, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.49", "min_intra_species_ani": "99.11", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.87", "num_clustered_genomes": 13, "status": "-" }, { "accession": "GCA_903830725.1", "gtdb_species": "s__Limnohabitans sp903830725", "ani": 78.0366, "matched_fragments": 112, "total_fragments": 336, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.239, "cell_length": 0.156, "doubling_h": 0.378, "growth_tmp": 29.607, "optimum_tmp": 29.969, "optimum_ph": 6.903, "genome_size": 5778279.099, "gc_content": 62.976, "coding_genes": 5025.666, "rRNA16S_genes": 3.776, "tRNA_genes": 58.305, "gram_stain": 0.0, "sporulation": 0.013, "motility": 0.751, "range_salinity": 0.26, "facultative_respiration": 0.09, "anaerobic_respiration": 0.028, "aerobic_respiration": 0.88, "mesophilic_range_tmp": 0.982, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.017, "bacillus_cell_shape": 0.893, "coccus_cell_shape": 0.035, "filament_cell_shape": 0.003, "coccobacillus_cell_shape": 0.031, "vibrio_cell_shape": 0.021, "spiral_cell_shape": 0.014 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__Burkholderiaceae", "g__Limnohabitans", "s__Limnohabitans sp903896615" ], "_genome_taxon": [ "uncultured", "Burkholderiales", "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__Burkholderiaceae", "g__Limnohabitans", "s__Limnohabitans sp903896615", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Burkholderiales", "Burkholderiaceae", "Limnohabitans", "Limnohabitans", "sp903896615" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000027", "label": "pond" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }