{ "type": "genome", "identifier": "GCA_903883535.1", "organism": "uncultured Burkholderiales bacterium", "title": "uncultured Burkholderiales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903883535.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6948077", "wgs_master": "CAISBI000000000.1", "refseq_category": "na", "taxid": "208544", "species_taxid": "208544", "organism_name": "uncultured Burkholderiales bacterium", "infraspecific_name": "", "isolate": "Ja1-D2_bin-0112", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/18", "asm_name": "freshwater MAG --- Ja1-D2_bin-0112", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/883/535/GCA_903883535.1_freshwater_MAG_---_Ja1-D2_bin-0112", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-18", "dateModified": "2020-07-18", "datePublished": "2020-07-18", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Burkholderiales bacterium" ], "sample_taxid": [ "208544" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "0.721 MB", "sample_ph_range": { "min": 68.0, "max": 68.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 18.06, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2613137", "Number of Sequences": "1077", "Longest Sequences (bp)": "11123", "N50 (bp)": "2417", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.2", "Number of CDSs": "1486", "Average Protein Length": "278.2", "Coding Ratio (%)": "47.5", "Number of rRNAs": "0", "Number of tRNAs": "13", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rubrivivax benzoatilyticus", "strain": "strain=JA2", "accession": "GCA_000190375.2", "taxid": 316997, "species_taxid": 316997, "relation_to_type": "type", "validated": true, "ani": 78.6634, "matched_fragments": 101, "total_fragments": 234, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrivivax benzoatilyticus", "strain": "strain=JA2", "accession": "GCA_000420125.1", "taxid": 316997, "species_taxid": 316997, "relation_to_type": "type", "validated": true, "ani": 78.6042, "matched_fragments": 101, 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"Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Burkholderiales", "Burkholderiaceae", "Aquabacterium", "A", "s", "", "" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }