{ "type": "genome", "identifier": "GCA_903883655.1", "organism": "uncultured beta proteobacterium", "title": "uncultured beta proteobacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903883655.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6945893", "wgs_master": "CAISBT000000000.1", "refseq_category": "na", "taxid": "86027", "species_taxid": "86027", "organism_name": "uncultured beta proteobacterium", "infraspecific_name": "", "isolate": "KR2_bin-0556", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/17", "asm_name": "freshwater MAG --- KR2_bin-0556", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/883/655/GCA_903883655.1_freshwater_MAG_---_KR2_bin-0556", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-17", "dateModified": "2020-07-17", "datePublished": "2020-07-17", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured beta proteobacterium" ], "sample_taxid": [ "86027" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "0.359 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 122.0, "max": 122.0 }, "completeness": 41.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1242097", "Number of Sequences": "227", "Longest Sequences (bp)": "36364", "N50 (bp)": "7732", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.2", "Number of CDSs": "1005", "Average Protein Length": "297.8", "Coding Ratio (%)": "72.3", "Number of rRNAs": "0", "Number of tRNAs": "21", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Polynucleobacter finlandensis", "strain": "strain=MWH-Mekk-B1", "accession": "GCA_018881755.1", "taxid": 1855894, "species_taxid": 1855894, "relation_to_type": "type", "validated": true, "ani": 92.9648, "matched_fragments": 270, "total_fragments": 288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter aenigmaticus", "strain": "strain=MWH-K35W1", "accession": "GCA_002206635.1", "taxid": 1743164, "species_taxid": 1743164, "relation_to_type": "type", "validated": true, "ani": 78.9767, "matched_fragments": 145, "total_fragments": 288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter parvulilacunae", "strain": "strain=Ross1-W9", "accession": "GCA_018881715.1", "taxid": 1855631, "species_taxid": 1855631, "relation_to_type": "type", "validated": true, "ani": 78.9673, "matched_fragments": 144, "total_fragments": 288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter hallstattensis", "strain": "strain=MWH-Hall10", "accession": "GCA_018881835.1", "taxid": 1855586, "species_taxid": 1855586, "relation_to_type": "type", "validated": true, "ani": 78.9524, "matched_fragments": 136, "total_fragments": 288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter hirudinilacicola", "strain": "strain=MWH-EgelM1-30-B4", "accession": "GCA_002192535.1", "taxid": 1743166, "species_taxid": 1743166, "relation_to_type": "type", "validated": true, "ani": 78.9033, "matched_fragments": 140, "total_fragments": 288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter campilacus", "strain": "strain=MWH-Feld-100", "accession": "GCA_002206625.1", "taxid": 1743163, "species_taxid": 1743163, "relation_to_type": "type", "validated": true, "ani": 78.8513, "matched_fragments": 132, "total_fragments": 288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter arcticus", "strain": "strain=UK-Long2-W17", "accession": "GCA_013307205.1", "taxid": 1743165, "species_taxid": 1743165, "relation_to_type": "type", "validated": true, "ani": 78.7198, "matched_fragments": 129, "total_fragments": 288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter alcilacus", "strain": "strain=UK-Pondora-W15", "accession": "GCA_018881545.1", "taxid": 1819739, "species_taxid": 1819739, "relation_to_type": "type", "validated": true, "ani": 78.6018, "matched_fragments": 135, "total_fragments": 288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter nymphae", "strain": "strain=AP-Mumm-500A-B3", "accession": "GCA_018882155.1", "taxid": 2081043, "species_taxid": 2081043, "relation_to_type": "type", "validated": true, "ani": 78.6001, "matched_fragments": 136, "total_fragments": 288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter tropicus", "strain": "strain=MWH-UH21B", "accession": "GCA_013307225.1", "taxid": 1743174, "species_taxid": 1743174, "relation_to_type": "type", "validated": true, "ani": 78.4728, "matched_fragments": 121, "total_fragments": 288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter sphagniphilus", "strain": "strain=MWH-Weng1-1", "accession": "GCA_001953355.1", "taxid": 1743169, "species_taxid": 1743169, "relation_to_type": "type", "validated": true, "ani": 78.1898, "matched_fragments": 117, "total_fragments": 288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter meluiroseus", "strain": "strain=AP-Melu-1000-B4", "accession": "GCA_900205755.1", "taxid": 1938814, "species_taxid": 1938814, "relation_to_type": "type", "validated": true, "ani": 77.7716, "matched_fragments": 86, "total_fragments": 288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter brandtiae", "strain": "strain=UB-Domo-W1", "accession": "GCA_002797575.1", "taxid": 1938816, "species_taxid": 1938816, "relation_to_type": "type", "validated": true, "ani": 77.7198, "matched_fragments": 98, "total_fragments": 288, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 41.67, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_018881755.1", "gtdb_species": "s__Polynucleobacter sp903953215", "ani": 92.9648, "matched_fragments": 270, "total_fragments": 288, "gtdb_taxonomy": 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