{ "type": "genome", "identifier": "GCA_903883675.1", "organism": "uncultured Methylophilaceae bacterium", "title": "uncultured Methylophilaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903883675.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6946413", "wgs_master": "CAISBV000000000.1", "refseq_category": "na", "taxid": "239732", "species_taxid": "239732", "organism_name": "uncultured Methylophilaceae bacterium", "infraspecific_name": "", "isolate": "KT2_bin-278", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/17", "asm_name": "freshwater MAG --- KT2_bin-278", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/883/675/GCA_903883675.1_freshwater_MAG_---_KT2_bin-278", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-17", "dateModified": "2020-07-17", "datePublished": "2020-07-17", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Methylophilaceae bacterium" ], "sample_taxid": [ "239732" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "0.363 MB", "sample_ph_range": { "min": 6961.0, "max": 6961.0 }, "sample_temperature_range": { "min": 106.0, "max": 106.0 }, "completeness": 63.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903899965.1", "gtdb_species": "s__Methylopumilus_A sp903899965", "ani": 86.4016, "matched_fragments": 154, "total_fragments": 190, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylopumilus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.90", "min_intra_species_ani": "98.39", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.86", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCF_000953015.1", "gtdb_species": "s__Methylopumilus_A turicensis", "ani": 84.4025, "matched_fragments": 146, "total_fragments": 190, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylopumilus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903870995.1", "gtdb_species": "s__Methylopumilus_A sp903870995", "ani": 83.2105, "matched_fragments": 146, "total_fragments": 190, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylopumilus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.94", "min_intra_species_ani": "99.94", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_903870165.1", "gtdb_species": "s__Methylopumilus_A sp903870165", "ani": 83.1753, "matched_fragments": 139, "total_fragments": 190, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylopumilus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.91", "min_intra_species_ani": "99.91", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903909015.1", "gtdb_species": "s__Methylopumilus_A sp903909015", "ani": 79.871, "matched_fragments": 107, "total_fragments": 190, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylopumilus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.79", "min_intra_species_ani": "98.38", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.83", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_903953055.1", "gtdb_species": "s__Methylopumilus_A sp903953055", "ani": 79.1653, "matched_fragments": 105, "total_fragments": 190, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylopumilus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.11", "min_intra_species_ani": "98.29", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.83", "num_clustered_genomes": 22, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.503, "cell_length": 0.048, "doubling_h": -0.071, "growth_tmp": 30.333, "optimum_tmp": 30.041, "optimum_ph": 7.266, "genome_size": 2555180.003, "gc_content": 46.657, "coding_genes": 2203.6, "rRNA16S_genes": 1.8, "tRNA_genes": 43.0, "gram_stain": 0.0, "sporulation": 0.25, "motility": 0.75, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__Methylophilaceae", "g__Methylopumilus_A", "s__" ], "_genome_taxon": [ "uncultured", "Methylophilaceae", "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__Methylophilaceae", "g__Methylopumilus_A", "s__", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Burkholderiales", "Methylophilaceae", "Methylopumilus", "A", "s", "", "" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }