{ "type": "genome", "identifier": "GCA_903883945.1", "organism": "uncultured Chitinophagaceae bacterium", "title": "uncultured Chitinophagaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903883945.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6950961", "wgs_master": "CAISCV000000000.1", "refseq_category": "na", "taxid": "866510", "species_taxid": "866510", "organism_name": "uncultured Chitinophagaceae bacterium", "infraspecific_name": "", "isolate": "Ki1-1-6m_bin-0879", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/19", "asm_name": "freshwater MAG --- Ki1-1-6m_bin-0879", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/883/945/GCA_903883945.1_freshwater_MAG_---_Ki1-1-6m_bin-0879", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-19", "dateModified": "2020-07-19", "datePublished": "2020-07-19", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Chitinophagaceae bacterium" ], "sample_taxid": [ "866510" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "1.165 MB", "sample_ph_range": { "min": 499.0, "max": 499.0 }, "sample_temperature_range": { "min": 161.0, "max": 161.0 }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4092800", "Number of Sequences": "314", "Longest Sequences (bp)": "95834", "N50 (bp)": "19054", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.5", "Number of CDSs": "3104", "Average Protein Length": "329.2", "Coding Ratio (%)": "74.9", "Number of rRNAs": "1", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903883945.1", "gtdb_species": "s__JAAFHG01 sp903883945", "ani": 100.0, "matched_fragments": 1199, "total_fragments": 1205, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__JAAFHG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_903895845.1", "gtdb_species": "s__JAAFHG01 sp903895845", "ani": 82.2232, "matched_fragments": 644, "total_fragments": 1205, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__JAAFHG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.87", "min_intra_species_ani": "99.60", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.96", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_013297585.1", "gtdb_species": "s__JAAFHG01 sp013297585", "ani": 76.7887, "matched_fragments": 84, "total_fragments": 1205, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__JAAFHG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001829005.1", "gtdb_species": "s__Sediminibacterium sp001829005", "ani": 76.5138, "matched_fragments": 52, "total_fragments": 1205, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.07", "min_intra_species_ani": "96.16", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_002337145.1", "gtdb_species": "s__UBA1930 sp002337145", "ani": 76.0569, "matched_fragments": 54, "total_fragments": 1205, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__UBA1930", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.322, "cell_length": 0.364, "doubling_h": null, "growth_tmp": 30.538, "optimum_tmp": 29.829, "optimum_ph": 6.773, "genome_size": 5998721.602, "gc_content": 44.915, "coding_genes": 5429.047, "rRNA16S_genes": 3.5, "tRNA_genes": 54.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.225, "range_salinity": null, "facultative_respiration": 0.034, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.965, "mesophilic_range_tmp": 0.75, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.25, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Chitinophagales", "f__Chitinophagaceae", "g__JAAFHG01", "s__JAAFHG01 sp903883945" ], "_genome_taxon": [ "uncultured", "Chitinophagaceae", "bacterium", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Chitinophagales", "f__Chitinophagaceae", "g__JAAFHG01", "s__JAAFHG01 sp903883945", "Bacteria", "Bacteroidota", "Bacteroidia", "Chitinophagales", "Chitinophagaceae", "JAAFHG01", "JAAFHG01", "sp903883945" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }