{ "type": "genome", "identifier": "GCA_903889355.1", "organism": "uncultured Geobacter sp.", "title": "uncultured Geobacter sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903889355.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6949048", "wgs_master": "CAISXD000000000.1", "refseq_category": "na", "taxid": "186741", "species_taxid": "186741", "organism_name": "uncultured Geobacter sp.", "infraspecific_name": "", "isolate": "A4_bin-482", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/19", "asm_name": "freshwater MAG --- A4_bin-482", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/889/355/GCA_903889355.1_freshwater_MAG_---_A4_bin-482", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-19", "dateModified": "2020-07-19", "datePublished": "2020-07-19", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Geobacter sp." ], "sample_taxid": [ "186741" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada" ], "sample_host_location_id": [], "data_size": "0.969 MB", "sample_ph_range": { "min": 601.0, "max": 601.0 }, "sample_temperature_range": { "min": 56.0, "max": 56.0 }, "completeness": 64.58, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3392347", "Number of Sequences": "781", "Longest Sequences (bp)": "26215", "N50 (bp)": "5172", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.5", "Number of CDSs": "2412", "Average Protein Length": "297.0", "Coding Ratio (%)": "63.3", "Number of rRNAs": "0", "Number of tRNAs": "28", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Geobacter pickeringii", "strain": "strain=G13", "accession": "GCA_000817955.1", "taxid": 345632, "species_taxid": 345632, "relation_to_type": "type", "validated": true, "ani": 77.7564, "matched_fragments": 152, "total_fragments": 704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geobacter grbiciae", "strain": "strain=DSM 13689", "accession": "GCA_018531165.1", "taxid": 155042, "species_taxid": 155042, "relation_to_type": "type", "validated": true, "ani": 77.6985, "matched_fragments": 143, "total_fragments": 704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geobacter argillaceus", "strain": "strain=ATCC 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Trichlorobacter lovleyi", "strain": "strain=SZ", "accession": "GCA_000020385.1", "taxid": 313985, "species_taxid": 313985, "relation_to_type": "type", "validated": true, "ani": 76.1592, "matched_fragments": 65, "total_fragments": 704, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 64.58, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903902855.1", "gtdb_species": "s__CAIOGM01 sp903902855", "ani": 99.2417, "matched_fragments": 607, "total_fragments": 704, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__CAIOGM01;g__CAIOGM01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.18", "min_intra_species_ani": "98.73", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.86", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCA_903857795.1", "gtdb_species": 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