{
    "type": "genome",
    "identifier": "GCA_903892135.1",
    "organism": "uncultured Burkholderiales bacterium",
    "title": "uncultured Burkholderiales bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "BILS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_903892135.1",
        "bioproject": "PRJEB38681",
        "biosample": "SAMEA6950525",
        "wgs_master": "CAITHF000000000.1",
        "refseq_category": "na",
        "taxid": "208544",
        "species_taxid": "208544",
        "organism_name": "uncultured Burkholderiales bacterium",
        "infraspecific_name": "",
        "isolate": "MJ-2014-D2_bin-0748",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/19",
        "asm_name": "freshwater MAG --- MJ-2014-D2_bin-0748",
        "submitter": "BILS",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/892/135/GCA_903892135.1_freshwater_MAG_---_MJ-2014-D2_bin-0748",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-19",
    "dateModified": "2020-07-19",
    "datePublished": "2020-07-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Burkholderiales bacterium"
        ],
        "sample_taxid": [
            "208544"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Finland"
        ],
        "sample_host_location_id": [],
        "data_size": "0.909 MB",
        "sample_ph_range": {
            "min": 554.0,
            "max": 554.0
        },
        "sample_temperature_range": {
            "min": 126.0,
            "max": 126.0
        },
        "completeness": 100.0,
        "contamination": 0.46,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3185136",
        "Number of Sequences": "383",
        "Longest Sequences (bp)": "86062",
        "N50 (bp)": "12633",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "50.0",
        "Number of CDSs": "2701",
        "Average Protein Length": "304.3",
        "Coding Ratio (%)": "77.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "33",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Limnohabitans radicicola",
                "strain": "strain=JUR4",
                "accession": "GCA_014837235.1",
                "taxid": 2771427,
                "species_taxid": 2771427,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8383,
                "matched_fragments": 53,
                "total_fragments": 865,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limnohabitans curvus",
                "strain": "strain=MWH-C5",
                "accession": "GCA_003063475.1",
                "taxid": 323423,
                "species_taxid": 323423,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7253,
                "matched_fragments": 97,
                "total_fragments": 865,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Curvibacter lanceolatus",
                "strain": "strain=ATCC 14669",
                "accession": "GCA_000381265.1",
                "taxid": 86182,
                "species_taxid": 86182,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4346,
                "matched_fragments": 58,
                "total_fragments": 865,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodoferax lacus",
                "strain": "strain=IMCC26218",
                "accession": "GCA_003415675.1",
                "taxid": 2184758,
                "species_taxid": 2184758,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2009,
                "matched_fragments": 50,
                "total_fragments": 865,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Curvibacter gracilis",
                "strain": "strain=ATCC BAA-807",
                "accession": "GCA_000518645.1",
                "taxid": 230310,
                "species_taxid": 230310,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1883,
                "matched_fragments": 54,
                "total_fragments": 865,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.46,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_903861115.1",
                "gtdb_species": "s__Limnohabitans sp903861115",
                "ani": 99.3736,
                "matched_fragments": 676,
                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.34",
                "min_intra_species_ani": "98.85",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 13,
                "status": "conclusive"
            },
            {
                "accession": "GCA_903933115.1",
                "gtdb_species": "s__Limnohabitans sp903933115",
                "ani": 79.749,
                "matched_fragments": 451,
                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.52",
                "min_intra_species_ani": "99.52",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903842945.1",
                "gtdb_species": "s__Limnohabitans sp903842945",
                "ani": 79.5743,
                "matched_fragments": 433,
                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.16",
                "min_intra_species_ani": "99.13",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_903864315.1",
                "gtdb_species": "s__Limnohabitans sp903864315",
                "ani": 78.0366,
                "matched_fragments": 186,
                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.27",
                "min_intra_species_ani": "99.18",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_903844385.1",
                "gtdb_species": "s__Limnohabitans sp903844385",
                "ani": 77.987,
                "matched_fragments": 171,
                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.69",
                "min_intra_species_ani": "99.69",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903865035.1",
                "gtdb_species": "s__Limnohabitans sp903865035",
                "ani": 77.8652,
                "matched_fragments": 158,
                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.19",
                "min_intra_species_ani": "99.05",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_903831655.1",
                "gtdb_species": "s__Limnohabitans sp903831655",
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                "matched_fragments": 165,
                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903887655.1",
                "gtdb_species": "s__Limnohabitans sp903887655",
                "ani": 77.3722,
                "matched_fragments": 147,
                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.79",
                "min_intra_species_ani": "98.79",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_009693305.1",
                "gtdb_species": "s__Limnohabitans sp009693305",
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                "matched_fragments": 58,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009921265.1",
                "gtdb_species": "s__Limnohabitans sp009921265",
                "ani": 76.6364,
                "matched_fragments": 67,
                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.67",
                "min_intra_species_ani": "99.66",
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                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_903856875.1",
                "gtdb_species": "s__Limnohabitans_A sp903856875",
                "ani": 76.6346,
                "matched_fragments": 51,
                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009693505.1",
                "gtdb_species": "s__Limnohabitans_A sp009693505",
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                "matched_fragments": 79,
                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903870145.1",
                "gtdb_species": "s__Limnohabitans_A sp903870145",
                "ani": 76.3825,
                "matched_fragments": 96,
                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.83",
                "min_intra_species_ani": "99.72",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 26,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.239,
        "cell_length": 0.156,
        "doubling_h": 0.378,
        "growth_tmp": 29.607,
        "optimum_tmp": 29.969,
        "optimum_ph": 6.903,
        "genome_size": 5778279.099,
        "gc_content": 62.976,
        "coding_genes": 5025.666,
        "rRNA16S_genes": 3.776,
        "tRNA_genes": 58.305,
        "gram_stain": 0.0,
        "sporulation": 0.013,
        "motility": 0.751,
        "range_salinity": 0.26,
        "facultative_respiration": 0.09,
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        "aerobic_respiration": 0.88,
        "mesophilic_range_tmp": 0.982,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.017,
        "bacillus_cell_shape": 0.893,
        "coccus_cell_shape": 0.035,
        "filament_cell_shape": 0.003,
        "coccobacillus_cell_shape": 0.031,
        "vibrio_cell_shape": 0.021,
        "spiral_cell_shape": 0.014
    },
    "_gtdb_taxon": [
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        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
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        "f__Burkholderiaceae",
        "g__Limnohabitans",
        "s__Limnohabitans sp903861115"
    ],
    "_genome_taxon": [
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        "Burkholderiales",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Limnohabitans",
        "s__Limnohabitans sp903861115",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Burkholderiaceae",
        "Limnohabitans",
        "Limnohabitans",
        "sp903861115"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}