{ "type": "genome", "identifier": "GCA_903892545.1", "organism": "uncultured Hyphomicrobiales bacterium", "title": "uncultured Hyphomicrobiales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903892545.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6955301", "wgs_master": "CAITIV000000000.1", "refseq_category": "na", "taxid": "208549", "species_taxid": "208549", "organism_name": "uncultured Hyphomicrobiales bacterium", "infraspecific_name": "", "isolate": "AlinenLipids_bin-1671", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/19", "asm_name": "freshwater MAG --- AlinenLipids_bin-1671", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/892/545/GCA_903892545.1_freshwater_MAG_---_AlinenLipids_bin-1671", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-19", "dateModified": "2020-07-19", "datePublished": "2020-07-19", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Hyphomicrobiales bacterium" ], "sample_taxid": [ "208549" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "1.113 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 68.06, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4036764", "Number of Sequences": "488", "Longest Sequences (bp)": "60509", "N50 (bp)": "12632", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.3", "Number of CDSs": "3493", "Average Protein Length": "305.1", "Coding Ratio (%)": "79.2", "Number of rRNAs": "1", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bosea thiooxidans", "strain": "strain=DSM 9653", "accession": "GCA_900168195.1", "taxid": 53254, "species_taxid": 53254, "relation_to_type": "type", "validated": true, "ani": 76.8216, "matched_fragments": 225, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bosea psychrotolerans", "strain": "strain=1131", "accession": "GCA_002917105.1", "taxid": 1871628, "species_taxid": 1871628, "relation_to_type": "type", "validated": true, "ani": 76.8084, "matched_fragments": 218, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Candidatus Rhodoblastus alkanivorans", "strain": "", "accession": "GCA_022760755.1", "taxid": 2954117, "species_taxid": 2954117, "relation_to_type": "type", "validated": true, "ani": 76.7792, "matched_fragments": 193, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylosinus trichosporium", "strain": "strain=OB3b", "accession": "GCA_002752655.1", "taxid": 426, "species_taxid": 426, "relation_to_type": "type", "validated": true, "ani": 76.7319, "matched_fragments": 232, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alsobacter metallidurans", "strain": "strain=CGMCC 1.12214", "accession": "GCA_014636935.1", "taxid": 340221, "species_taxid": 340221, "relation_to_type": "type", "validated": true, "ani": 76.7288, "matched_fragments": 203, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus caeni", "strain": "strain=DSM 103737", "accession": "GCA_014196925.1", "taxid": 1348468, "species_taxid": 1348468, "relation_to_type": "type", "validated": true, "ani": 76.725, "matched_fragments": 235, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bosea caraganae", "strain": "strain=RCAM 04680", "accession": "GCA_003351345.1", "taxid": 2763117, "species_taxid": 2763117, "relation_to_type": "type", "validated": true, "ani": 76.7019, "matched_fragments": 251, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga roseola", "strain": "strain=SM2", "accession": "GCA_020866965.1", "taxid": 2883126, "species_taxid": 2883126, "relation_to_type": "type", "validated": true, "ani": 76.6997, "matched_fragments": 136, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylosinus trichosporium", "strain": "strain=OB3b", "accession": "GCA_000178815.2", "taxid": 426, "species_taxid": 426, "relation_to_type": "type", "validated": true, "ani": 76.6825, "matched_fragments": 233, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga thermotolerans", "strain": "strain=HR1", "accession": "GCA_009363855.1", "taxid": 2651334, "species_taxid": 2651334, "relation_to_type": "type", "validated": true, "ani": 76.6589, "matched_fragments": 150, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Afipia carboxidovorans", "strain": "strain=OM5; ATCC 49405", "accession": "GCA_000021365.1", "taxid": 40137, "species_taxid": 40137, "relation_to_type": "type", "validated": true, "ani": 76.4772, "matched_fragments": 133, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga mediterraneensis", "strain": "strain=Marseille-Q2068", "accession": "GCA_013520865.1", "taxid": 2754695, "species_taxid": 2754695, "relation_to_type": "type", "validated": true, "ani": 76.4497, "matched_fragments": 176, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phreatobacter oligotrophus", "strain": "strain=DSM 25521", "accession": "GCA_003046185.1", "taxid": 1122261, "species_taxid": 1122261, "relation_to_type": "type", "validated": true, "ani": 76.4487, "matched_fragments": 221, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Afipia carboxidovorans", "strain": "strain=OM5", "accession": "GCA_000218565.1", "taxid": 40137, "species_taxid": 40137, "relation_to_type": "type", "validated": true, "ani": 76.445, "matched_fragments": 135, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylocystis silviterrae", "strain": "strain=FS", "accession": "GCA_013350005.1", "taxid": 2743612, "species_taxid": 2743612, "relation_to_type": "type", "validated": true, "ani": 76.4232, "matched_fragments": 155, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium diversitatis", "strain": "strain=CNPSo 4019", "accession": "GCA_016031635.1", "taxid": 2755406, "species_taxid": 2755406, "relation_to_type": "type", "validated": true, "ani": 76.3825, "matched_fragments": 227, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lichenibacterium ramalinae", "strain": "strain=RmlP001", "accession": "GCA_004137085.1", "taxid": 2316527, "species_taxid": 2316527, "relation_to_type": "type", "validated": true, "ani": 76.3806, "matched_fragments": 217, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylocystis hirsuta", "strain": "strain=CSC1", "accession": "GCA_003722355.1", "taxid": 369798, "species_taxid": 369798, "relation_to_type": "type", "validated": true, "ani": 76.3652, "matched_fragments": 166, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterovirga rhinocerotis", "strain": "strain=DSM 25903", "accession": "GCA_004363955.1", "taxid": 1339210, "species_taxid": 1339210, "relation_to_type": "type", "validated": true, "ani": 76.35, "matched_fragments": 170, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium aquaticum", "strain": "strain=DSM 16371", "accession": "GCA_001043915.1", "taxid": 270351, "species_taxid": 270351, "relation_to_type": "type", "validated": true, "ani": 76.319, "matched_fragments": 192, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseiarcus fermentans", "strain": "strain=DSM 24875", "accession": "GCA_003315135.1", "taxid": 1473586, "species_taxid": 1473586, "relation_to_type": "type", "validated": true, "ani": 76.2907, "matched_fragments": 258, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinarimonas rosea", "strain": "strain=DSM 21201", "accession": "GCA_000429045.1", "taxid": 552063, "species_taxid": 552063, "relation_to_type": "type", "validated": true, "ani": 76.252, "matched_fragments": 234, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oryzihabitans", "strain": "strain=TER-1", "accession": "GCA_004004555.2", "taxid": 2499852, "species_taxid": 2499852, "relation_to_type": "type", "validated": true, "ani": 76.2246, "matched_fragments": 243, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium gregans", "strain": "strain=NBRC 103626", "accession": "GCA_022179245.1", "taxid": 374424, "species_taxid": 374424, "relation_to_type": "type", "validated": true, "ani": 76.2099, "matched_fragments": 194, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylorubrum suomiense", "strain": "strain=DSM 14458", "accession": "GCA_022179765.1", "taxid": 144191, "species_taxid": 144191, "relation_to_type": "type", "validated": true, "ani": 76.1469, "matched_fragments": 175, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinarimonas soli", "strain": "strain=BN140002", "accession": "GCA_008386575.1", "taxid": 1638099, "species_taxid": 1638099, "relation_to_type": "type", "validated": true, "ani": 76.1305, "matched_fragments": 189, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium dankookense", "strain": "strain=DSM 22415", "accession": "GCA_022179165.1", "taxid": 560405, "species_taxid": 560405, "relation_to_type": "type", "validated": true, "ani": 76.1296, "matched_fragments": 212, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylocapsa aurea", "strain": "strain=KYG", "accession": "GCA_000746085.1", "taxid": 663610, "species_taxid": 663610, "relation_to_type": "type", "validated": true, "ani": 76.079, "matched_fragments": 148, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium iners", "strain": "strain=DSM 19015", "accession": "GCA_022179305.1", "taxid": 418707, "species_taxid": 418707, "relation_to_type": "type", "validated": true, "ani": 76.0767, "matched_fragments": 180, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium hispanicum", "strain": "strain=DSM 16372", "accession": "GCA_022179285.1", "taxid": 270350, "species_taxid": 270350, "relation_to_type": "type", "validated": true, "ani": 76.075, "matched_fragments": 211, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium isbiliense", "strain": "strain=DSM 17168", "accession": "GCA_022179325.1", "taxid": 315478, "species_taxid": 315478, "relation_to_type": "type", "validated": true, "ani": 76.0685, "matched_fragments": 223, "total_fragments": 1086, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 68.06, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903861645.1", "gtdb_species": "s__28-YEA-48 sp903861645", "ani": 98.7931, "matched_fragments": 1022, "total_fragments": 1086, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__28-YEA-48", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.51", "min_intra_species_ani": "98.79", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCA_903885755.1", "gtdb_species": "s__28-YEA-48 sp903885755", "ani": 80.0661, "matched_fragments": 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