{
    "type": "genome",
    "identifier": "GCA_903893075.1",
    "organism": "uncultured Holophagaceae bacterium",
    "title": "uncultured Holophagaceae bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "BILS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_903893075.1",
        "bioproject": "PRJEB38681",
        "biosample": "SAMEA6948310",
        "wgs_master": "CAITKZ000000000.1",
        "refseq_category": "na",
        "taxid": "904990",
        "species_taxid": "904990",
        "organism_name": "uncultured Holophagaceae bacterium",
        "infraspecific_name": "",
        "isolate": "Ki2-D3_bin-0476",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/18",
        "asm_name": "freshwater MAG --- Ki2-D3_bin-0476",
        "submitter": "BILS",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/893/075/GCA_903893075.1_freshwater_MAG_---_Ki2-D3_bin-0476",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-18",
    "dateModified": "2020-07-18",
    "datePublished": "2020-07-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Holophagaceae bacterium"
        ],
        "sample_taxid": [
            "904990"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Sweden"
        ],
        "sample_host_location_id": [],
        "data_size": "0.552 MB",
        "sample_ph_range": {
            "min": 501.0,
            "max": 501.0
        },
        "sample_temperature_range": {
            "min": 74.0,
            "max": 74.0
        },
        "completeness": 44.55,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1991081",
        "Number of Sequences": "706",
        "Longest Sequences (bp)": "18218",
        "N50 (bp)": "2940",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "68.0",
        "Number of CDSs": "1131",
        "Average Protein Length": "290.4",
        "Coding Ratio (%)": "49.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "20",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Geothrix fermentans",
                "strain": "strain=DSM 14018",
                "accession": "GCA_000428885.1",
                "taxid": 44676,
                "species_taxid": 44676,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.5971,
                "matched_fragments": 183,
                "total_fragments": 255,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Holophaga foetida",
                "strain": "strain=DSM 6591",
                "accession": "GCA_000242615.3",
                "taxid": 35839,
                "species_taxid": 35839,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1037,
                "matched_fragments": 70,
                "total_fragments": 255,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 44.55,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_903840385.1",
                "gtdb_species": "s__Geothrix sp903840385",
                "ani": 99.3237,
                "matched_fragments": 243,
                "total_fragments": 255,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Holophagae;o__Holophagales;f__Holophagaceae;g__Geothrix",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.80",
                "min_intra_species_ani": "99.80",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_903890595.1",
                "gtdb_species": "s__Geothrix sp903890595",
                "ani": 92.2239,
                "matched_fragments": 207,
                "total_fragments": 255,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Holophagae;o__Holophagales;f__Holophagaceae;g__Geothrix",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.18",
                "min_intra_species_ani": "98.75",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_903880675.1",
                "gtdb_species": "s__Geothrix sp903880675",
                "ani": 90.322,
                "matched_fragments": 183,
                "total_fragments": 255,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Holophagae;o__Holophagales;f__Holophagaceae;g__Geothrix",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.42",
                "min_intra_species_ani": "97.72",
                "mean_intra_species_af": "0.70",
                "min_intra_species_af": "0.62",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_903857495.1",
                "gtdb_species": "s__Geothrix sp903857495",
                "ani": 84.6307,
                "matched_fragments": 217,
                "total_fragments": 255,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Holophagae;o__Holophagales;f__Holophagaceae;g__Geothrix",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.97",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 50,
                "status": "-"
            },
            {
                "accession": "GCA_903937385.1",
                "gtdb_species": "s__Geothrix sp903937385",
                "ani": 84.5263,
                "matched_fragments": 206,
                "total_fragments": 255,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Holophagae;o__Holophagales;f__Holophagaceae;g__Geothrix",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.84",
                "min_intra_species_ani": "98.90",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCA_903843705.1",
                "gtdb_species": "s__Geothrix sp903843705",
                "ani": 84.4627,
                "matched_fragments": 201,
                "total_fragments": 255,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Holophagae;o__Holophagales;f__Holophagaceae;g__Geothrix",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.09",
                "min_intra_species_ani": "98.86",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_013334395.1",
                "gtdb_species": "s__Geothrix sp013334395",
                "ani": 84.4033,
                "matched_fragments": 192,
                "total_fragments": 255,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Holophagae;o__Holophagales;f__Holophagaceae;g__Geothrix",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013390615.1",
                "gtdb_species": "s__Geothrix sp013390615",
                "ani": 82.4477,
                "matched_fragments": 188,
                "total_fragments": 255,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Holophagae;o__Holophagales;f__Holophagaceae;g__Geothrix",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003538615.1",
                "gtdb_species": "s__Geothrix sp003538615",
                "ani": 82.3013,
                "matched_fragments": 145,
                "total_fragments": 255,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Holophagae;o__Holophagales;f__Holophagaceae;g__Geothrix",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016195985.1",
                "gtdb_species": "s__Geothrix sp016195985",
                "ani": 81.4721,
                "matched_fragments": 170,
                "total_fragments": 255,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Holophagae;o__Holophagales;f__Holophagaceae;g__Geothrix",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -1.0,
        "cell_length": 0.0,
        "doubling_h": null,
        "growth_tmp": 31.5,
        "optimum_tmp": 32.5,
        "optimum_ph": 7.15,
        "genome_size": 3708525.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Acidobacteriota",
        "c__Holophagae",
        "o__Holophagales",
        "f__Holophagaceae",
        "g__Geothrix",
        "s__Geothrix sp903840385"
    ],
    "_genome_taxon": [
        "uncultured",
        "Holophagaceae",
        "bacterium",
        "d__Bacteria",
        "p__Acidobacteriota",
        "c__Holophagae",
        "o__Holophagales",
        "f__Holophagaceae",
        "g__Geothrix",
        "s__Geothrix sp903840385",
        "Bacteria",
        "Acidobacteriota",
        "Holophagae",
        "Holophagales",
        "Holophagaceae",
        "Geothrix",
        "Geothrix",
        "sp903840385"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}