{ "type": "genome", "identifier": "GCA_903893625.1", "organism": "uncultured Oscillatoriales cyanobacterium", "title": "uncultured Oscillatoriales cyanobacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903893625.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6954377", "wgs_master": "CAITND000000000.1", "refseq_category": "na", "taxid": "156210", "species_taxid": "156210", "organism_name": "uncultured Oscillatoriales cyanobacterium", "infraspecific_name": "", "isolate": "KTt_bin-1839", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/20", "asm_name": "freshwater MAG --- KTt_bin-1839", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/893/625/GCA_903893625.1_freshwater_MAG_---_KTt_bin-1839", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-20", "dateModified": "2020-07-20", "datePublished": "2020-07-20", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Oscillatoriales cyanobacterium" ], "sample_taxid": [ "156210" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "1.653 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5827500", "Number of Sequences": "277", "Longest Sequences (bp)": "115819", "N50 (bp)": "37547", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.5", "Number of CDSs": "4989", "Average Protein Length": "321.4", "Coding Ratio (%)": "82.5", "Number of rRNAs": "0", "Number of tRNAs": "39", "Number of CRISPRs": "10" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Planktothrix tepida", "strain": "strain=PCC9214", "accession": "GCA_904830955.1", "taxid": 1678309, "species_taxid": 1678309, "relation_to_type": "type", "validated": true, "ani": 86.1158, "matched_fragments": 1413, "total_fragments": 1805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planktothrix agardhii", "strain": "strain=NIES-204", "accession": "GCA_003609755.1", "taxid": 1160, "species_taxid": 1160, "relation_to_type": "type", "validated": true, "ani": 84.9755, "matched_fragments": 1171, "total_fragments": 1805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Argonema antarcticum", "strain": "strain=A004/B2", "accession": "GCA_023333585.1", "taxid": 2942763, "species_taxid": 2942763, "relation_to_type": "type", "validated": true, "ani": 76.4653, "matched_fragments": 113, "total_fragments": 1805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nostoc favosum", "strain": "strain=CHAB 5714", "accession": "GCA_020829495.1", "taxid": 2907819, "species_taxid": 2907819, "relation_to_type": "type", "validated": true, "ani": 75.7132, "matched_fragments": 72, "total_fragments": 1805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nostoc punctiforme", "strain": "strain=ATCC 29133; PCC 73102", "accession": "GCA_000020025.1", "taxid": 272131, "species_taxid": 272131, "relation_to_type": "type", "validated": true, "ani": 75.6872, "matched_fragments": 79, "total_fragments": 1805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oscillatoria acuminata", "strain": "strain=PCC 6304", "accession": "GCA_000317105.1", "taxid": 118323, "species_taxid": 118323, "relation_to_type": "type", "validated": true, "ani": 75.5635, "matched_fragments": 96, "total_fragments": 1805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gloeothece citriformis", "strain": "strain=PCC 7424", "accession": "GCA_000021825.1", "taxid": 2546356, "species_taxid": 2546356, "relation_to_type": "type", "validated": true, "ani": 75.4022, "matched_fragments": 157, "total_fragments": 1805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aetokthonos hydrillicola", "strain": "strain=CCALA 1050", "accession": "GCA_017591665.1", "taxid": 1550245, "species_taxid": 1550245, "relation_to_type": "type", "validated": true, "ani": 75.3982, "matched_fragments": 70, "total_fragments": 1805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Okeania hirsuta", "strain": "strain=PAB10Feb10-1", "accession": "GCA_003838195.1", "taxid": 1458930, "species_taxid": 1458930, "relation_to_type": "type", "validated": true, "ani": 75.3576, "matched_fragments": 119, "total_fragments": 1805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Iningainema tapete", "strain": "strain=BLCC-T55", "accession": "GCA_014698965.1", "taxid": 2806730, "species_taxid": 2806730, "relation_to_type": "type", "validated": true, "ani": 75.1337, "matched_fragments": 69, "total_fragments": 1805, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903893625.1", "gtdb_species": "s__Planktothrix sp903893625", "ani": 100.0, "matched_fragments": 1793, "total_fragments": 1805, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Planktothrix", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_900010725.2", "gtdb_species": "s__Planktothrix serta", "ani": 91.0574, "matched_fragments": 1452, "total_fragments": 1805, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Planktothrix", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014697575.1", "gtdb_species": "s__Planktothrix sp014697575", "ani": 86.4768, "matched_fragments": 1432, "total_fragments": 1805, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Planktothrix", "ani_circumscription_radius": 95.0, 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900009275.2", "gtdb_species": "s__Planktothrix rubescens", "ani": 85.6051, "matched_fragments": 1235, "total_fragments": 1805, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Planktothrix", "ani_circumscription_radius": 96.6657, "mean_intra_species_ani": "98.32", "min_intra_species_ani": "97.64", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCA_003609755.1", "gtdb_species": "s__Planktothrix agardhii", "ani": 84.9698, "matched_fragments": 1172, "total_fragments": 1805, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Planktothrix", "ani_circumscription_radius": 96.6657, "mean_intra_species_ani": "99.00", "min_intra_species_ani": 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