{ "type": "genome", "identifier": "GCA_903893695.1", "organism": "uncultured Holophagaceae bacterium", "title": "uncultured Holophagaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903893695.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6954771", "wgs_master": "CAITNJ000000000.1", "refseq_category": "na", "taxid": "904990", "species_taxid": "904990", "organism_name": "uncultured Holophagaceae bacterium", "infraspecific_name": "", "isolate": "D14_bin-0709", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/19", "asm_name": "freshwater MAG --- D14_bin-0709", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/893/695/GCA_903893695.1_freshwater_MAG_---_D14_bin-0709", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-19", "dateModified": "2020-07-19", "datePublished": "2020-07-19", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Holophagaceae bacterium" ], "sample_taxid": [ "904990" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada" ], "sample_host_location_id": [], "data_size": "1.184 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.37, "contamination": 4.55, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4247475", "Number of Sequences": "299", "Longest Sequences (bp)": "107005", "N50 (bp)": "22597", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.1", "Number of CDSs": "3538", "Average Protein Length": "327.5", "Coding Ratio (%)": "81.8", "Number of rRNAs": "1", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Geothrix fermentans", "strain": "strain=DSM 14018", "accession": "GCA_000428885.1", "taxid": 44676, "species_taxid": 44676, "relation_to_type": "type", "validated": true, "ani": 82.9811, "matched_fragments": 648, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Holophaga foetida", "strain": "strain=DSM 6591", "accession": "GCA_000242615.3", "taxid": 35839, "species_taxid": 35839, "relation_to_type": "type", "validated": true, "ani": 77.9187, "matched_fragments": 250, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Inmirania thermothiophila", "strain": "strain=DSM 100275", "accession": "GCA_003751635.1", "taxid": 1750597, "species_taxid": 1750597, "relation_to_type": "type", "validated": true, "ani": 75.412, "matched_fragments": 55, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospira oryzae", "strain": "strain=DSM 21223", "accession": "GCA_004217225.1", "taxid": 146939, "species_taxid": 146939, "relation_to_type": "type", "validated": true, "ani": 75.3522, "matched_fragments": 88, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter aquaticus", "strain": "strain=LMG 30558", "accession": "GCA_015159745.1", "taxid": 2780094, "species_taxid": 2780094, "relation_to_type": "type", "validated": true, "ani": 75.3402, "matched_fragments": 86, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stigmatella erecta", "strain": "strain=DSM 16858", "accession": "GCA_900111745.1", "taxid": 83460, "species_taxid": 83460, "relation_to_type": "type", "validated": true, "ani": 75.0129, "matched_fragments": 118, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces spirodelae", "strain": "strain=DW4-2", "accession": "GCA_017676385.1", "taxid": 2812904, "species_taxid": 2812904, "relation_to_type": "type", "validated": true, "ani": 74.6804, "matched_fragments": 55, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.37, "contamination": 4.55, "strain_heterogeneity": 50.0 }, "gtdb_result": [ { "accession": "GCA_903913215.1", "gtdb_species": "s__Geothrix sp903913215", "ani": 99.7906, "matched_fragments": 1086, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Holophagae;o__Holophagales;f__Holophagaceae;g__Geothrix", 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