{ "type": "genome", "identifier": "GCA_903893765.1", "organism": "uncultured Actinomycetes bacterium", "title": "uncultured Actinomycetes bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903893765.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6955556", "wgs_master": "CAITNP000000000.1", "refseq_category": "na", "taxid": "152507", "species_taxid": "152507", "organism_name": "uncultured Actinomycetes bacterium", "infraspecific_name": "", "isolate": "LaPlata_bin-0840", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/17", "asm_name": "freshwater MAG --- LaPlata_bin-0840", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/893/765/GCA_903893765.1_freshwater_MAG_---_LaPlata_bin-0840", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-17", "dateModified": "2020-07-17", "datePublished": "2020-07-17", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Actinomycetes bacterium" ], "sample_taxid": [ "152507" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Puerto Rico" ], "sample_host_location_id": [], "data_size": "0.520 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.63, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1929759", "Number of Sequences": "473", "Longest Sequences (bp)": "31438", "N50 (bp)": "4858", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.7", "Number of CDSs": "1578", "Average Protein Length": "280.4", "Coding Ratio (%)": "68.8", "Number of rRNAs": "1", "Number of tRNAs": "38", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Miltoncostaea marina", "strain": "strain=SCSIO 60955", "accession": "GCA_018141525.1", "taxid": 2843215, "species_taxid": 2843215, "relation_to_type": "type", "validated": true, "ani": 78.1725, "matched_fragments": 177, "total_fragments": 385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Miltoncostaea oceani", "strain": "strain=SCSIO 61214", "accession": "GCA_018141545.1", "taxid": 2843216, "species_taxid": 2843216, "relation_to_type": "type", "validated": true, "ani": 77.7056, "matched_fragments": 160, "total_fragments": 385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gaiella occulta", "strain": "strain=F2-233", "accession": "GCA_003351045.1", "taxid": 1002870, "species_taxid": 1002870, "relation_to_type": "type", "validated": true, "ani": 75.936, "matched_fragments": 67, "total_fragments": 385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Capillimicrobium parvum", "strain": "strain=0166_1", "accession": "GCA_021172045.1", "taxid": 2884022, "species_taxid": 2884022, "relation_to_type": "type", "validated": true, "ani": 75.7813, "matched_fragments": 88, "total_fragments": 385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Conexibacter woesei", "strain": "strain=DSM 14684", "accession": "GCA_000025265.1", "taxid": 191495, "species_taxid": 191495, "relation_to_type": "type", "validated": true, "ani": 75.7411, "matched_fragments": 85, "total_fragments": 385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Conexibacter arvalis", "strain": "strain=DSM 23288", "accession": "GCA_014199525.1", "taxid": 912552, "species_taxid": 912552, "relation_to_type": "type", "validated": true, "ani": 75.6714, "matched_fragments": 94, "total_fragments": 385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraconexibacter algicola", "strain": "strain=Seoho-28", "accession": "GCA_003044185.1", "taxid": 2133960, "species_taxid": 2133960, "relation_to_type": "type", "validated": true, "ani": 75.5492, "matched_fragments": 94, "total_fragments": 385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geodermatophilus poikilotrophus", "strain": "strain=DSM 44209", "accession": "GCA_900111455.1", "taxid": 1333667, "species_taxid": 1333667, "relation_to_type": "type", "validated": true, "ani": 75.2261, "matched_fragments": 64, "total_fragments": 385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klenkia soli", "strain": "strain=DSM 45843", "accession": "GCA_900103975.1", "taxid": 1052260, "species_taxid": 1052260, "relation_to_type": "type", "validated": true, "ani": 75.2074, "matched_fragments": 59, "total_fragments": 385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geodermatophilus nigrescens", "strain": "strain=DSM 45408", "accession": "GCA_900129495.1", "taxid": 1070870, "species_taxid": 1070870, "relation_to_type": "type", "validated": true, "ani": 75.1737, "matched_fragments": 81, "total_fragments": 385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides marinisabuli", "strain": "strain=DSM 18965", "accession": "GCA_013409965.1", "taxid": 419476, "species_taxid": 419476, "relation_to_type": "type", "validated": true, "ani": 75.1725, "matched_fragments": 68, "total_fragments": 385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geodermatophilus normandii", "strain": "strain=DSM 45417", "accession": "GCA_003182485.1", "taxid": 1137989, "species_taxid": 1137989, "relation_to_type": "type", "validated": true, "ani": 75.0641, "matched_fragments": 72, "total_fragments": 385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora humi", "strain": "strain=RB6PN24", "accession": "GCA_020907985.1", "taxid": 2893891, "species_taxid": 2893891, "relation_to_type": "type", "validated": true, "ani": 75.0363, "matched_fragments": 71, "total_fragments": 385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora spheciospongiae", "strain": "strain=EG49", "accession": "GCA_000564855.1", "taxid": 909613, "species_taxid": 909613, "relation_to_type": "type", "validated": true, "ani": 75.0038, "matched_fragments": 74, "total_fragments": 385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planobispora longispora", "strain": "strain=NBRC 13918", "accession": "GCA_016863135.1", 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