{
    "type": "genome",
    "identifier": "GCA_903894235.1",
    "organism": "uncultured Nevskia sp.",
    "title": "uncultured Nevskia sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "BILS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_903894235.1",
        "bioproject": "PRJEB38681",
        "biosample": "SAMEA6948411",
        "wgs_master": "CAITPM000000000.1",
        "refseq_category": "na",
        "taxid": "228950",
        "species_taxid": "228950",
        "organism_name": "uncultured Nevskia sp.",
        "infraspecific_name": "",
        "isolate": "MJ120827B_bin-085",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/18",
        "asm_name": "freshwater MAG --- MJ120827B_bin-085",
        "submitter": "BILS",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/894/235/GCA_903894235.1_freshwater_MAG_---_MJ120827B_bin-085",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-18",
    "dateModified": "2020-07-18",
    "datePublished": "2020-07-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Nevskia sp."
        ],
        "sample_taxid": [
            "228950"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Finland"
        ],
        "sample_host_location_id": [],
        "data_size": "0.700 MB",
        "sample_ph_range": {
            "min": 561.0,
            "max": 561.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 43.88,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2503295",
        "Number of Sequences": "998",
        "Longest Sequences (bp)": "9115",
        "N50 (bp)": "2549",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "64.7",
        "Number of CDSs": "1391",
        "Average Protein Length": "273.5",
        "Coding Ratio (%)": "45.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "12",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Nevskia ramosa",
                "strain": "strain=DSM 11499",
                "accession": "GCA_000420645.1",
                "taxid": 64002,
                "species_taxid": 64002,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.3769,
                "matched_fragments": 211,
                "total_fragments": 232,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nevskia soli",
                "strain": "strain=DSM 19509",
                "accession": "GCA_000711955.1",
                "taxid": 418856,
                "species_taxid": 418856,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.779,
                "matched_fragments": 81,
                "total_fragments": 232,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Solimonas variicoloris",
                "strain": "strain=DSM 15731",
                "accession": "GCA_000382285.1",
                "taxid": 254408,
                "species_taxid": 254408,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6082,
                "matched_fragments": 72,
                "total_fragments": 232,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrocarboniphaga effusa",
                "strain": "strain=AP103",
                "accession": "GCA_000271305.1",
                "taxid": 243629,
                "species_taxid": 243629,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5319,
                "matched_fragments": 69,
                "total_fragments": 232,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Solimonas flava",
                "strain": "strain=DSM 18980",
                "accession": "GCA_000426685.1",
                "taxid": 415849,
                "species_taxid": 415849,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4598,
                "matched_fragments": 86,
                "total_fragments": 232,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Solimonas aquatica",
                "strain": "strain=DSM 25927",
                "accession": "GCA_900111015.1",
                "taxid": 489703,
                "species_taxid": 489703,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3731,
                "matched_fragments": 69,
                "total_fragments": 232,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrocarboniphaga daqingensis",
                "strain": "strain=CGMCC 1.7049",
                "accession": "GCA_900129825.1",
                "taxid": 490188,
                "species_taxid": 490188,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0299,
                "matched_fragments": 67,
                "total_fragments": 232,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Solimonas terrae",
                "strain": "strain=KIS83-12",
                "accession": "GCA_011067135.1",
                "taxid": 1396819,
                "species_taxid": 1396819,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9522,
                "matched_fragments": 63,
                "total_fragments": 232,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 43.88,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_903885465.1",
                "gtdb_species": "s__Nevskia sp903885465",
                "ani": 99.4223,
                "matched_fragments": 227,
                "total_fragments": 232,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nevskiales;f__Nevskiaceae;g__Nevskia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000420645.1",
                "gtdb_species": "s__Nevskia ramosa",
                "ani": 92.3769,
                "matched_fragments": 211,
                "total_fragments": 232,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nevskiales;f__Nevskiaceae;g__Nevskia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013823855.1",
                "gtdb_species": "s__Nevskia sp013823855",
                "ani": 82.9664,
                "matched_fragments": 163,
                "total_fragments": 232,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nevskiales;f__Nevskiaceae;g__Nevskia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903822975.1",
                "gtdb_species": "s__Nevskia sp903822975",
                "ani": 77.8141,
                "matched_fragments": 74,
                "total_fragments": 232,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nevskiales;f__Nevskiaceae;g__Nevskia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000711955.1",
                "gtdb_species": "s__Nevskia soli",
                "ani": 77.779,
                "matched_fragments": 81,
                "total_fragments": 232,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nevskiales;f__Nevskiaceae;g__Nevskia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003428335.1",
                "gtdb_species": "s__Solimonas_A sp003428335",
                "ani": 77.6751,
                "matched_fragments": 62,
                "total_fragments": 232,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nevskiales;f__Nevskiaceae;g__Solimonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016779605.1",
                "gtdb_species": "s__Nevskia sp016779605",
                "ani": 77.613,
                "matched_fragments": 71,
                "total_fragments": 232,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nevskiales;f__Nevskiaceae;g__Nevskia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_008012115.1",
                "gtdb_species": "s__Stenotrophobium sp008012115",
                "ani": 77.1746,
                "matched_fragments": 50,
                "total_fragments": 232,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nevskiales;f__Nevskiaceae;g__Stenotrophobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003201205.1",
                "gtdb_species": "s__Sinimarinibacterium flocculans",
                "ani": 77.1576,
                "matched_fragments": 54,
                "total_fragments": 232,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nevskiales;f__Nevskiaceae;g__Sinimarinibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900129825.1",
                "gtdb_species": "s__Hydrocarboniphaga daqingensis",
                "ani": 77.0299,
                "matched_fragments": 67,
                "total_fragments": 232,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nevskiales;f__Nevskiaceae;g__Hydrocarboniphaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903970615.1",
                "gtdb_species": "s__Nevskia sp903970615",
                "ani": 76.9592,
                "matched_fragments": 51,
                "total_fragments": 232,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nevskiales;f__Nevskiaceae;g__Nevskia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003730135.1",
                "gtdb_species": "s__Stagnimonas aquatica",
                "ani": 76.7569,
                "matched_fragments": 65,
                "total_fragments": 232,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nevskiales;f__Nevskiaceae;g__Stagnimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.253,
        "cell_length": 0.209,
        "doubling_h": null,
        "growth_tmp": 27.8,
        "optimum_tmp": 27.75,
        "optimum_ph": 6.5,
        "genome_size": 5147947.5,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Nevskiales",
        "f__Nevskiaceae",
        "g__Nevskia",
        "s__Nevskia sp903885465"
    ],
    "_genome_taxon": [
        "uncultured",
        "Nevskia",
        "sp.",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Nevskiales",
        "f__Nevskiaceae",
        "g__Nevskia",
        "s__Nevskia sp903885465",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Nevskiales",
        "Nevskiaceae",
        "Nevskia",
        "Nevskia",
        "sp903885465"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}