{ "type": "genome", "identifier": "GCA_903894555.1", "organism": "uncultured bacterium", "title": "uncultured bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903894555.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6950511", "wgs_master": "CAITQO000000000.1", "refseq_category": "na", "taxid": "77133", "species_taxid": "77133", "organism_name": "uncultured bacterium", "infraspecific_name": "", "isolate": "MJ-2014-D2_bin-0512", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/18", "asm_name": "freshwater MAG --- MJ-2014-D2_bin-0512", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/894/555/GCA_903894555.1_freshwater_MAG_---_MJ-2014-D2_bin-0512", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-18", "dateModified": "2020-07-18", "datePublished": "2020-07-18", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured bacterium" ], "sample_taxid": [ "77133" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "0.645 MB", "sample_ph_range": { "min": 554.0, "max": 554.0 }, "sample_temperature_range": { "min": 126.0, "max": 126.0 }, "completeness": 74.68, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2249908", "Number of Sequences": "453", "Longest Sequences (bp)": "37297", "N50 (bp)": "6180", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.6", "Number of CDSs": "1799", "Average Protein Length": "289.0", "Coding Ratio (%)": "69.3", "Number of rRNAs": "0", "Number of tRNAs": "26", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Noviherbaspirillum saxi", "strain": "strain=K1R23-30", "accession": "GCA_003591035.1", "taxid": 2320863, "species_taxid": 2320863, "relation_to_type": "type", "validated": true, "ani": 77.1476, "matched_fragments": 97, "total_fragments": 501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herminiimonas fonticola", "strain": "strain=DSM 18555", "accession": "GCA_004361795.1", "taxid": 303380, "species_taxid": 303380, "relation_to_type": "type", "validated": true, "ani": 77.1279, "matched_fragments": 73, "total_fragments": 501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herminiimonas fonticola", "strain": "strain=S-94", "accession": "GCA_003293745.1", "taxid": 303380, "species_taxid": 303380, "relation_to_type": "type", "validated": true, "ani": 77.1279, "matched_fragments": 73, "total_fragments": 501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia cavernae", "strain": "strain=K1S02-61", "accession": "GCA_003590855.1", "taxid": 2320864, "species_taxid": 2320864, "relation_to_type": "type", "validated": true, "ani": 77.04, "matched_fragments": 57, "total_fragments": 501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum robiniae", "strain": "strain=HZ10", "accession": "GCA_002213415.1", "taxid": 2014887, "species_taxid": 2014887, "relation_to_type": "type", "validated": true, "ani": 77.0343, "matched_fragments": 67, "total_fragments": 501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum aquaticum", "strain": "strain=IEH 4430", "accession": "GCA_002213425.1", "taxid": 568783, "species_taxid": 568783, "relation_to_type": "type", "validated": true, "ani": 76.9864, "matched_fragments": 82, "total_fragments": 501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum chlorophenolicum", "strain": "strain=CPW301", "accession": "GCA_001189955.1", "taxid": 211589, "species_taxid": 211589, "relation_to_type": "type", "validated": true, "ani": 76.9779, "matched_fragments": 76, "total_fragments": 501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum chlorophenolicum", "strain": "strain=NBRC 102525", "accession": "GCA_001571165.1", "taxid": 211589, "species_taxid": 211589, "relation_to_type": "type", "validated": true, "ani": 76.9779, "matched_fragments": 76, "total_fragments": 501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum rhizosphaerae", "strain": "strain=UMS-37", "accession": "GCA_001189965.1", "taxid": 346179, "species_taxid": 346179, "relation_to_type": "type", "validated": true, "ani": 76.9568, "matched_fragments": 97, "total_fragments": 501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oxalicibacterium flavum", "strain": "strain=CCM 7086", "accession": "GCA_014635065.1", "taxid": 179467, "species_taxid": 179467, "relation_to_type": "type", "validated": true, "ani": 76.9249, "matched_fragments": 77, "total_fragments": 501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum autotrophicum", "strain": "strain=IAM 14942", "accession": "GCA_001189915.1", "taxid": 180195, "species_taxid": 180195, "relation_to_type": "type", "validated": true, "ani": 76.923, "matched_fragments": 110, "total_fragments": 501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oxalicibacterium solurbis", "strain": "strain=CCM 7664", "accession": "GCA_014635845.1", "taxid": 69280, "species_taxid": 69280, "relation_to_type": "type", "validated": true, "ani": 76.8758, "matched_fragments": 81, "total_fragments": 501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum aerium", "strain": "strain=122213-3", "accession": "GCA_008929045.1", "taxid": 2588497, "species_taxid": 2588497, "relation_to_type": "type", "validated": true, "ani": 76.7893, "matched_fragments": 90, "total_fragments": 501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Undibacterium terreum", "strain": "strain=CGMCC 1.10998", "accession": "GCA_014636315.1", "taxid": 1224302, "species_taxid": 1224302, "relation_to_type": "type", "validated": true, "ani": 76.731, "matched_fragments": 92, "total_fragments": 501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Duganella aceris", "strain": "strain=SAP-35", "accession": "GCA_011090165.1", "taxid": 2703883, "species_taxid": 2703883, "relation_to_type": "type", "validated": true, "ani": 76.6096, "matched_fragments": 76, "total_fragments": 501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rugamonas brunnea", "strain": "strain=LX20W", "accession": "GCA_014042345.1", "taxid": 2758569, "species_taxid": 2758569, "relation_to_type": "type", "validated": true, "ani": 76.608, "matched_fragments": 67, "total_fragments": 501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Duganella phyllosphaerae", "strain": "strain=T54", "accession": "GCA_001758785.1", "taxid": 762836, "species_taxid": 762836, "relation_to_type": "type", "validated": true, "ani": 76.59, "matched_fragments": 73, "total_fragments": 501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collimonas antrihumi", "strain": "strain=DSM 104040", "accession": "GCA_018304965.1", "taxid": 1940615, "species_taxid": 1940615, "relation_to_type": "type", "validated": true, "ani": 76.583, "matched_fragments": 90, "total_fragments": 501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum malthae", "strain": "strain=CC-AFH3", "accession": "GCA_015352985.1", "taxid": 1260987, "species_taxid": 1260987, "relation_to_type": "type", "validated": true, "ani": 76.5729, "matched_fragments": 104, "total_fragments": 501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum autotrophicum", "strain": "strain=TSA66", "accession": "GCA_000818395.1", "taxid": 709839, "species_taxid": 709839, "relation_to_type": "type", "validated": true, "ani": 76.5575, "matched_fragments": 84, "total_fragments": 501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum pedocola", "strain": "strain=DKR-6", "accession": "GCA_016632335.1", "taxid": 2801341, "species_taxid": 2801341, "relation_to_type": "type", "validated": true, "ani": 76.5417, "matched_fragments": 98, "total_fragments": 501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Undibacterium pigrum", "strain": "strain=DSM 19792", "accession": "GCA_003201815.1", "taxid": 401470, "species_taxid": 401470, "relation_to_type": "type", "validated": true, "ani": 76.4612, "matched_fragments": 72, "total_fragments": 501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collimonas arenae", "strain": "strain=Ter10", "accession": "GCA_001584165.1", "taxid": 279058, "species_taxid": 279058, "relation_to_type": "type", "validated": true, "ani": 76.3566, "matched_fragments": 77, "total_fragments": 501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Undibacterium parvum", "strain": "strain=DSM 23061", "accession": "GCA_003955735.1", "taxid": 401471, "species_taxid": 401471, "relation_to_type": "type", "validated": true, "ani": 76.306, "matched_fragments": 57, "total_fragments": 501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Duganella levis", "strain": "strain=CY42W", "accession": "GCA_009857605.1", "taxid": 2692169, "species_taxid": 2692169, "relation_to_type": "type", "validated": true, "ani": 76.2957, "matched_fragments": 79, "total_fragments": 501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Duganella lactea", "strain": "strain=FT50W", "accession": "GCA_009857505.1", "taxid": 2692173, "species_taxid": 2692173, "relation_to_type": "type", "validated": true, "ani": 76.1889, "matched_fragments": 71, "total_fragments": 501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum humi", "strain": "strain=U15", "accession": "GCA_900188095.1", "taxid": 1688639, "species_taxid": 1688639, "relation_to_type": "type", "validated": true, "ani": 76.0813, "matched_fragments": 92, "total_fragments": 501, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 74.68, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903872555.1", "gtdb_species": "s__SYFN01 sp903872555", "ani": 98.2542, "matched_fragments": 406, "total_fragments": 501, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__SYFN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.62", "min_intra_species_ani": "98.25", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.81", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_010024875.1", "gtdb_species": "s__SYFN01 sp010024875", "ani": 77.3268, "matched_fragments": 142, "total_fragments": 501, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__SYFN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015352955.1", "gtdb_species": "s__Noviherbaspirillum_A soli", "ani": 77.2726, "matched_fragments": 99, "total_fragments": 501, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Noviherbaspirillum_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903904635.1", "gtdb_species": "s__SYFN01 sp903904635", "ani": 77.1909, "matched_fragments": 117, "total_fragments": 501, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__SYFN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_019052805.1", "gtdb_species": "s__Noviherbaspirillum_A sp019052805", "ani": 77.1547, "matched_fragments": 103, "total_fragments": 501, "gtdb_taxonomy": 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