{ "type": "genome", "identifier": "GCA_903894895.1", "organism": "uncultured Methanomicrobiales archaeon", "title": "uncultured Methanomicrobiales archaeon", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903894895.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6955230", "wgs_master": "CAITRV000000000.1", "refseq_category": "na", "taxid": "183760", "species_taxid": "183760", "organism_name": "uncultured Methanomicrobiales archaeon", "infraspecific_name": "", "isolate": "AM_bin-3944", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/19", "asm_name": "freshwater MAG --- AM_bin-3944", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/894/895/GCA_903894895.1_freshwater_MAG_---_AM_bin-3944", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-19", "dateModified": "2020-07-19", "datePublished": "2020-07-19", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Methanomicrobiales archaeon" ], "sample_taxid": [ "183760" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "0.940 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3261338", "Number of Sequences": "448", "Longest Sequences (bp)": "51007", "N50 (bp)": "10989", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.4", "Number of CDSs": "2795", "Average Protein Length": "266.8", "Coding Ratio (%)": "68.6", "Number of rRNAs": "1", "Number of tRNAs": "54", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methanoregula formicica", "strain": "strain=SMSP", "accession": "GCA_000327485.1", "taxid": 882104, "species_taxid": 882104, "relation_to_type": "type", "validated": true, "ani": 76.5108, "matched_fragments": 52, "total_fragments": 847, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903819595.1", "gtdb_species": "s__CAIKOD01 sp903819595", "ani": 99.6791, "matched_fragments": 753, "total_fragments": 847, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoregulaceae;g__CAIKOD01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.21", "min_intra_species_ani": "98.92", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.83", "num_clustered_genomes": 9, "status": "conclusive" }, { "accession": "GCA_903828975.1", "gtdb_species": "s__CAIKOD01 sp903828975", "ani": 81.5084, "matched_fragments": 416, "total_fragments": 847, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoregulaceae;g__CAIKOD01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903832665.1", "gtdb_species": "s__Methanoregula sp903832665", "ani": 76.4714, "matched_fragments": 63, "total_fragments": 847, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoregulaceae;g__Methanoregula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.72", "min_intra_species_ani": "99.18", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.98", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_002503825.1", "gtdb_species": "s__UBA467 sp002503825", "ani": 76.2542, "matched_fragments": 61, "total_fragments": 847, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoregulaceae;g__UBA467", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.086, "cell_length": 0.11, "doubling_h": 1.123, "growth_tmp": 35.61, "optimum_tmp": 35.621, "optimum_ph": 6.957, "genome_size": 2358795.323, "gc_content": 53.366, "coding_genes": 2554.773, "rRNA16S_genes": 2.142, "tRNA_genes": 49.618, "gram_stain": 0.027, "sporulation": 0.0, "motility": 0.285, "range_salinity": 0.5, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 0.857, "thermophilic_range_tmp": 0.142, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.117, "coccus_cell_shape": 0.823, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.029, "spiral_cell_shape": 0.029 }, "_gtdb_taxon": [ "d__Archaea", "p__Halobacteriota", "c__Methanomicrobia", "o__Methanomicrobiales", "f__Methanospirillaceae", "g__CAIKOD01", "s__CAIKOD01 sp903819595" ], "_genome_taxon": [ "uncultured", "Methanomicrobiales", "archaeon", "d__Archaea", "p__Halobacteriota", "c__Methanomicrobia", "o__Methanomicrobiales", "f__Methanospirillaceae", "g__CAIKOD01", "s__CAIKOD01 sp903819595", "Archaea", "Halobacteriota", "Methanomicrobia", "Methanomicrobiales", "Methanospirillaceae", "CAIKOD01", "CAIKOD01", "sp903819595" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }