{ "type": "genome", "identifier": "GCA_903894935.1", "organism": "uncultured Verrucomicrobiota bacterium", "title": "uncultured Verrucomicrobiota bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903894935.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6955607", "wgs_master": "CAITSC000000000.1", "refseq_category": "na", "taxid": "156588", "species_taxid": "156588", "organism_name": "uncultured Verrucomicrobiota bacterium", "infraspecific_name": "", "isolate": "LaPlata_bin-2255", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/20", "asm_name": "freshwater MAG --- LaPlata_bin-2255", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/894/935/GCA_903894935.1_freshwater_MAG_---_LaPlata_bin-2255", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-20", "dateModified": "2020-07-20", "datePublished": "2020-07-20", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Verrucomicrobiota bacterium" ], "sample_taxid": [ "156588" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Puerto Rico" ], "sample_host_location_id": [], "data_size": "1.351 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.92, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4893103", "Number of Sequences": "686", "Longest Sequences (bp)": "76281", "N50 (bp)": "11341", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.4", "Number of CDSs": "3179", "Average Protein Length": "365.4", "Coding Ratio (%)": "71.2", "Number of rRNAs": "0", "Number of tRNAs": "52", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Limisphaera ngatamarikiensis", "strain": "strain=NGM72.4", "accession": "GCA_011044775.1", "taxid": 1324935, "species_taxid": 1324935, "relation_to_type": "type", "validated": true, "ani": 75.7007, "matched_fragments": 53, "total_fragments": 1257, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus stipitatus", "strain": "strain=DSM 14675", "accession": "GCA_000331735.1", "taxid": 83455, "species_taxid": 83455, "relation_to_type": "neotype", "validated": true, "ani": 74.8242, "matched_fragments": 65, "total_fragments": 1257, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea pusilla", "strain": "strain=DSM 43357", "accession": "GCA_900109355.1", "taxid": 46177, "species_taxid": 46177, "relation_to_type": "type", "validated": true, "ani": 74.6805, "matched_fragments": 100, "total_fragments": 1257, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polyangium aurulentum", "strain": "strain=SDU3-1", "accession": "GCA_005144635.2", "taxid": 2567896, "species_taxid": 2567896, "relation_to_type": "type", "validated": true, "ani": 74.6459, "matched_fragments": 89, "total_fragments": 1257, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinacidiphila acididurans", "strain": "strain=KK5PA1", "accession": "GCA_016918855.1", "taxid": 2784346, "species_taxid": 2784346, "relation_to_type": "type", "validated": true, "ani": 74.6364, "matched_fragments": 81, "total_fragments": 1257, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura cremea", "strain": "strain=JCM 3308", "accession": "GCA_014648495.1", "taxid": 1991, "species_taxid": 1991, "relation_to_type": "type", "validated": true, "ani": 74.622, "matched_fragments": 115, "total_fragments": 1257, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 97.92, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903925515.1", "gtdb_species": "s__UBA6176 sp903925515", "ani": 99.3114, "matched_fragments": 979, "total_fragments": 1257, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__UBA9464;g__UBA6176", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.40", "min_intra_species_ani": "99.34", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.83", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCA_903880005.1", "gtdb_species": 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