{ "type": "genome", "identifier": "GCA_903895205.1", "organism": "uncultured Planctomycetaceae bacterium", "title": "uncultured Planctomycetaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903895205.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6948223", "wgs_master": "CAITTF000000000.1", "refseq_category": "na", "taxid": "100233", "species_taxid": "100233", "organism_name": "uncultured Planctomycetaceae bacterium", "infraspecific_name": "", "isolate": "LaPlata-15m-a_bin-593", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/19", "asm_name": "freshwater MAG --- LaPlata-15m-a_bin-593", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/895/205/GCA_903895205.1_freshwater_MAG_---_LaPlata-15m-a_bin-593", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-19", "dateModified": "2020-07-19", "datePublished": "2020-07-19", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Planctomycetaceae bacterium" ], "sample_taxid": [ "100233" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Puerto Rico" ], "sample_host_location_id": [], "data_size": "0.905 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.98, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3318423", "Number of Sequences": "391", "Longest Sequences (bp)": "72735", "N50 (bp)": "12102", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.8", "Number of CDSs": "2431", "Average Protein Length": "348.0", "Coding Ratio (%)": "76.5", "Number of rRNAs": "0", "Number of tRNAs": "46", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudobythopirellula maris", "strain": "strain=Mal64", "accession": "GCA_007859945.1", "taxid": 2527991, "species_taxid": 2527991, "relation_to_type": "type", "validated": true, "ani": 76.4506, "matched_fragments": 122, "total_fragments": 906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Posidoniimonas polymericola", "strain": "strain=Pla123a", "accession": "GCA_007859935.1", "taxid": 2528002, "species_taxid": 2528002, "relation_to_type": "type", "validated": true, "ani": 76.3901, "matched_fragments": 119, "total_fragments": 906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Posidoniimonas corsicana", "strain": "strain=KOR34", "accession": "GCA_007859765.1", "taxid": 1938618, "species_taxid": 1938618, "relation_to_type": "type", "validated": true, "ani": 76.336, "matched_fragments": 120, "total_fragments": 906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Botrimarina colliarenosi", "strain": "strain=Pla108", "accession": "GCA_007859955.1", "taxid": 2528001, "species_taxid": 2528001, "relation_to_type": "type", "validated": true, "ani": 76.127, "matched_fragments": 123, "total_fragments": 906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Botrimarina mediterranea", "strain": "strain=Spa11", "accession": "GCA_007753265.1", "taxid": 2528022, "species_taxid": 2528022, "relation_to_type": "type", "validated": true, "ani": 75.9796, "matched_fragments": 104, "total_fragments": 906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacipirellula limnantheis", "strain": "strain=I41", "accession": "GCA_007746075.1", "taxid": 2528024, "species_taxid": 2528024, "relation_to_type": "type", "validated": true, "ani": 75.8765, "matched_fragments": 75, "total_fragments": 906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacipirellula parvula", "strain": "strain=PX69", "accession": "GCA_009177095.1", "taxid": 2650471, "species_taxid": 2650471, "relation_to_type": "type", "validated": true, "ani": 75.7983, "matched_fragments": 102, "total_fragments": 906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulifigura coniformis", "strain": "strain=Pan44", "accession": "GCA_007745175.1", "taxid": 2527983, "species_taxid": 2527983, "relation_to_type": "type", "validated": true, "ani": 75.5826, "matched_fragments": 59, "total_fragments": 906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tautonia sociabilis", "strain": "strain=GM2012", "accession": "GCA_003977685.1", "taxid": 2080755, "species_taxid": 2080755, "relation_to_type": "type", "validated": true, "ani": 75.5374, "matched_fragments": 89, "total_fragments": 906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tautonia plasticadhaerens", "strain": "strain=ElP", "accession": "GCA_007752535.1", "taxid": 2527974, "species_taxid": 2527974, "relation_to_type": "type", "validated": true, "ani": 75.4027, "matched_fragments": 136, "total_fragments": 906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tautonia marina", "strain": "strain=JC650", "accession": "GCA_009177065.1", "taxid": 2653855, "species_taxid": 2653855, "relation_to_type": "type", "validated": true, "ani": 75.3956, "matched_fragments": 55, "total_fragments": 906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastopirellula retiformator", "strain": "strain=Enr8", "accession": "GCA_007859755.1", "taxid": 2527970, "species_taxid": 2527970, "relation_to_type": "type", "validated": true, "ani": 75.3465, "matched_fragments": 52, "total_fragments": 906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquisphaera giovannonii", "strain": "strain=OJF2", "accession": "GCA_008087625.1", "taxid": 406548, "species_taxid": 406548, "relation_to_type": "type", "validated": true, "ani": 75.2853, "matched_fragments": 166, "total_fragments": 906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Urbifossiella limnaea", "strain": "strain=ETA_A1", "accession": "GCA_007747215.1", "taxid": 2528023, "species_taxid": 2528023, "relation_to_type": "type", "validated": true, "ani": 75.2286, "matched_fragments": 170, "total_fragments": 906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum oleiclasticum", "strain": "strain=RWY-5-1-1", "accession": "GCA_013423485.1", "taxid": 2735135, 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"label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }