{ "type": "genome", "identifier": "GCA_903895385.1", "organism": "uncultured Solirubrobacterales bacterium", "title": "uncultured Solirubrobacterales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903895385.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6948988", "wgs_master": "CAITTY000000000.1", "refseq_category": "na", "taxid": "768556", "species_taxid": "768556", "organism_name": "uncultured Solirubrobacterales bacterium", "infraspecific_name": "", "isolate": "LaPlata-15m-b_bin-690", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/17", "asm_name": "freshwater MAG --- LaPlata-15m-b_bin-690", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/895/385/GCA_903895385.1_freshwater_MAG_---_LaPlata-15m-b_bin-690", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-17", "dateModified": "2020-07-17", "datePublished": "2020-07-17", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Solirubrobacterales bacterium" ], "sample_taxid": [ "768556" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Puerto Rico" ], "sample_host_location_id": [], "data_size": "0.474 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 7.0, "strain_heterogeneity": 80.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1746807", "Number of Sequences": "388", "Longest Sequences (bp)": "22255", "N50 (bp)": "5536", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.9", "Number of CDSs": "1383", "Average Protein Length": "296.3", "Coding Ratio (%)": "70.4", "Number of rRNAs": "0", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Baekduia soli", "strain": "strain=BR7-21", "accession": "GCA_007970665.1", "taxid": 496014, "species_taxid": 496014, "relation_to_type": "type", "validated": true, "ani": 78.1127, "matched_fragments": 202, "total_fragments": 376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Capillimicrobium parvum", "strain": "strain=0166_1", "accession": "GCA_021172045.1", "taxid": 2884022, "species_taxid": 2884022, "relation_to_type": "type", "validated": true, "ani": 78.0004, "matched_fragments": 185, "total_fragments": 376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Conexibacter arvalis", "strain": "strain=DSM 23288", "accession": "GCA_014199525.1", "taxid": 912552, "species_taxid": 912552, "relation_to_type": "type", "validated": true, "ani": 77.8574, "matched_fragments": 201, "total_fragments": 376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraconexibacter algicola", "strain": "strain=Seoho-28", "accession": "GCA_003044185.1", "taxid": 2133960, "species_taxid": 2133960, "relation_to_type": "type", "validated": true, "ani": 77.8312, "matched_fragments": 200, "total_fragments": 376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Patulibacter medicamentivorans", "strain": "strain=I11", "accession": "GCA_000240225.2", "taxid": 1097667, "species_taxid": 1097667, "relation_to_type": "type", "validated": true, "ani": 77.428, "matched_fragments": 183, "total_fragments": 376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Conexibacter woesei", "strain": "strain=DSM 14684", "accession": "GCA_000025265.1", "taxid": 191495, "species_taxid": 191495, "relation_to_type": "type", "validated": true, "ani": 77.4038, "matched_fragments": 181, "total_fragments": 376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solirubrobacter pauli", "strain": "strain=DSM 14954", "accession": "GCA_003633755.1", "taxid": 166793, "species_taxid": 166793, "relation_to_type": "type", "validated": true, "ani": 77.2834, "matched_fragments": 163, "total_fragments": 376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Patulibacter minatonensis", "strain": "strain=DSM 18081", "accession": "GCA_000519325.1", "taxid": 298163, "species_taxid": 298163, "relation_to_type": "type", "validated": true, "ani": 76.9519, "matched_fragments": 145, "total_fragments": 376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Patulibacter americanus", "strain": "strain=DSM 16676", "accession": "GCA_000420025.1", "taxid": 588672, "species_taxid": 588672, "relation_to_type": "type", "validated": true, "ani": 76.7718, "matched_fragments": 133, "total_fragments": 376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides dongkuii", "strain": "strain=S-713", "accession": "GCA_014127485.1", "taxid": 2760089, "species_taxid": 2760089, "relation_to_type": "type", "validated": true, "ani": 75.9131, "matched_fragments": 72, "total_fragments": 376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ginsengisegetis", "strain": "strain=DSM 21349", "accession": "GCA_014138045.1", "taxid": 661491, "species_taxid": 661491, "relation_to_type": "type", "validated": true, "ani": 75.8726, "matched_fragments": 81, "total_fragments": 376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nakamurella deserti", "strain": "strain=12Sc4-1", "accession": "GCA_003260015.1", "taxid": 2164074, "species_taxid": 2164074, "relation_to_type": "type", "validated": true, "ani": 75.8162, "matched_fragments": 56, "total_fragments": 376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycicoccus mangrovi", "strain": "strain=KQZ13P-1", "accession": "GCA_018729305.1", "taxid": 2840470, "species_taxid": 2840470, "relation_to_type": "type", "validated": true, "ani": 75.5668, "matched_fragments": 76, "total_fragments": 376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycicoccus jejuensis", "strain": "strain=NRRL B-24460", "accession": "GCA_000720925.1", "taxid": 367299, "species_taxid": 367299, "relation_to_type": "type", "validated": true, "ani": 75.5083, "matched_fragments": 76, "total_fragments": 376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glycomyces xiaoerkulensis", "strain": "strain=TRM 41368", "accession": "GCA_002798405.1", "taxid": 2038139, 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