{
    "type": "genome",
    "identifier": "GCA_903896115.1",
    "organism": "uncultured Opitutae bacterium",
    "title": "uncultured Opitutae bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "BILS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_903896115.1",
        "bioproject": "PRJEB38681",
        "biosample": "SAMEA6948492",
        "wgs_master": "CAITWE000000000.1",
        "refseq_category": "na",
        "taxid": "575426",
        "species_taxid": "575426",
        "organism_name": "uncultured Opitutae bacterium",
        "infraspecific_name": "",
        "isolate": "VK3_bin-1527",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/18",
        "asm_name": "freshwater MAG --- VK3_bin-1527",
        "submitter": "BILS",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/896/115/GCA_903896115.1_freshwater_MAG_---_VK3_bin-1527",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-18",
    "dateModified": "2020-07-18",
    "datePublished": "2020-07-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Opitutae bacterium"
        ],
        "sample_taxid": [
            "575426"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Finland"
        ],
        "sample_host_location_id": [],
        "data_size": "0.744 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": 98.0,
            "max": 98.0
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2628660",
        "Number of Sequences": "84",
        "Longest Sequences (bp)": "172854",
        "N50 (bp)": "60858",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "62.0",
        "Number of CDSs": "2107",
        "Average Protein Length": "369.2",
        "Coding Ratio (%)": "88.8",
        "Number of rRNAs": "2",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Opitutus terrae",
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                "accession": "GCA_000019965.1",
                "taxid": 107709,
                "species_taxid": 107709,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8504,
                "matched_fragments": 53,
                "total_fragments": 830,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polyangium fumosum",
                "strain": "strain=DSM 14668",
                "accession": "GCA_005144585.1",
                "taxid": 889272,
                "species_taxid": 889272,
                "relation_to_type": "neotype",
                "validated": true,
                "ani": 74.7984,
                "matched_fragments": 52,
                "total_fragments": 830,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polyangium spumosum",
                "strain": "strain=DSM 14734",
                "accession": "GCA_009649845.1",
                "taxid": 889282,
                "species_taxid": 889282,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7848,
                "matched_fragments": 56,
                "total_fragments": 830,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCA_903855995.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.61",
                "min_intra_species_ani": "99.32",
                "mean_intra_species_af": "0.98",
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                "status": "conclusive"
            },
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__UBA953;g__UBA953",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
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                "gtdb_species": "s__UBA953 sp903829855",
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                "matched_fragments": 418,
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__UBA953;g__UBA953",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.27",
                "min_intra_species_ani": "99.00",
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                "num_clustered_genomes": 14,
                "status": "-"
            },
            {
                "accession": "GCA_009924535.1",
                "gtdb_species": "s__UBA953 sp009924535",
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                "matched_fragments": 327,
                "total_fragments": 830,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__UBA953;g__UBA953",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903853185.1",
                "gtdb_species": "s__UBA953 sp903853185",
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                "matched_fragments": 313,
                "total_fragments": 830,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__UBA953;g__UBA953",
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                "mean_intra_species_ani": "98.54",
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                "mean_intra_species_af": "0.77",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_003569165.1",
                "gtdb_species": "s__UBA953 sp003569165",
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                "matched_fragments": 466,
                "total_fragments": 830,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__UBA953;g__UBA953",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_004293385.1",
                "gtdb_species": "s__UBA953 sp004293385",
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__UBA953;g__UBA953",
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                "mean_intra_species_ani": "N/A",
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            },
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_002293125.1",
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            {
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            },
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                "accession": "GCA_903831005.1",
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            },
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                "accession": "GCA_014193315.1",
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            },
            {
                "accession": "GCA_002293065.1",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
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        "p__Verrucomicrobiota",
        "c__Verrucomicrobiae",
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        "f__UBA953",
        "g__UBA953",
        "s__UBA953 sp903855995"
    ],
    "_genome_taxon": [
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        "bacterium",
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Verrucomicrobiae",
        "o__Opitutales",
        "f__UBA953",
        "g__UBA953",
        "s__UBA953 sp903855995",
        "Bacteria",
        "Verrucomicrobiota",
        "Verrucomicrobiae",
        "Opitutales",
        "UBA953",
        "UBA953",
        "UBA953",
        "sp903855995"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}