{ "type": "genome", "identifier": "GCA_903896545.1", "organism": "uncultured Myxococcales bacterium", "title": "uncultured Myxococcales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903896545.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6952082", "wgs_master": "CAITYF000000000.1", "refseq_category": "na", "taxid": "253830", "species_taxid": "253830", "organism_name": "uncultured Myxococcales bacterium", "infraspecific_name": "", "isolate": "Ja1_bin-0143", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/20", "asm_name": "freshwater MAG --- Ja1_bin-0143", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/896/545/GCA_903896545.1_freshwater_MAG_---_Ja1_bin-0143", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-20", "dateModified": "2020-07-20", "datePublished": "2020-07-20", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Myxococcales bacterium" ], "sample_taxid": [ "253830" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "1.880 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "6755150", "Number of Sequences": "272", "Longest Sequences (bp)": "214787", "N50 (bp)": "46079", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.4", "Number of CDSs": "4878", "Average Protein Length": "401.9", "Coding Ratio (%)": "87.1", "Number of rRNAs": "0", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ramlibacter humi", "strain": "strain=18x22-1", "accession": "GCA_004681975.1", "taxid": 2530451, "species_taxid": 2530451, "relation_to_type": "type", "validated": true, "ani": 75.1045, "matched_fragments": 56, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella amyloliquefaciens", "strain": "strain=DHC06", "accession": "GCA_004296575.1", "taxid": 1770545, "species_taxid": 1770545, "relation_to_type": "type", "validated": true, "ani": 75.031, "matched_fragments": 55, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus praedator", "strain": "strain=CA031B", "accession": "GCA_003612125.1", "taxid": 2316724, "species_taxid": 2316724, "relation_to_type": "type", "validated": true, "ani": 74.9119, "matched_fragments": 96, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus terminator", "strain": "strain=CA054A", "accession": "GCA_003611635.1", "taxid": 2316733, "species_taxid": 2316733, "relation_to_type": "type", "validated": true, "ani": 74.8788, "matched_fragments": 103, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus sicarius", "strain": "strain=CA040B", "accession": "GCA_003611735.1", "taxid": 2316726, "species_taxid": 2316726, "relation_to_type": "type", "validated": true, "ani": 74.8613, "matched_fragments": 98, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus llansteffanensis", "strain": "strain=CA051B", "accession": "GCA_003612055.1", "taxid": 2316731, "species_taxid": 2316731, "relation_to_type": "type", "validated": true, "ani": 74.8525, "matched_fragments": 101, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia mayonis", "strain": "strain=BDU6", "accession": "GCA_001523745.2", "taxid": 1385591, "species_taxid": 1385591, "relation_to_type": "type", "validated": true, "ani": 74.8259, "matched_fragments": 101, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia oklahomensis", "strain": "strain=C6786", "accession": "GCA_000170375.1", "taxid": 342113, "species_taxid": 342113, "relation_to_type": "type", "validated": true, "ani": 74.817, "matched_fragments": 105, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia pseudomultivorans", "strain": "", "accession": "GCA_902499075.1", "taxid": 1207504, "species_taxid": 1207504, "relation_to_type": "suspected-type", "validated": true, "ani": 74.7969, "matched_fragments": 99, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia oklahomensis", "strain": "strain=LMG 23618", "accession": "GCA_900608545.1", "taxid": 342113, "species_taxid": 342113, "relation_to_type": "type", "validated": true, "ani": 74.7909, "matched_fragments": 122, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia oklahomensis", "strain": "strain=C6786", "accession": "GCA_001522135.2", "taxid": 342113, "species_taxid": 342113, "relation_to_type": "type", "validated": true, "ani": 74.7902, "matched_fragments": 122, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pyxidicoccus caerfyrddinensis", "strain": "strain=CA032A", "accession": "GCA_010894405.1", "taxid": 2709663, "species_taxid": 2709663, "relation_to_type": "type", "validated": true, "ani": 74.7781, "matched_fragments": 121, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium guangxiense", "strain": "strain=CCBAU 53363", "accession": "GCA_004114915.1", "taxid": 1325115, "species_taxid": 1325115, "relation_to_type": "type", "validated": true, "ani": 74.6006, "matched_fragments": 67, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903896545.1", "gtdb_species": "s__CAIYBN01 sp903896545", "ani": 100.0, "matched_fragments": 2103, "total_fragments": 2117, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__UBA9042;o__UBA9042;f__UBA9042;g__CAIYBN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.47", "min_intra_species_ani": "98.78", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.88", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCA_903842345.1", "gtdb_species": "s__CAIYBN01 sp903842345", "ani": 80.966, "matched_fragments": 1154, "total_fragments": 2117, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__UBA9042;o__UBA9042;f__UBA9042;g__CAIYBN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.98", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_903850505.1", "gtdb_species": "s__CAIYBN01 sp903850505", "ani": 80.7938, "matched_fragments": 1032, "total_fragments": 2117, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__UBA9042;o__UBA9042;f__UBA9042;g__CAIYBN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, 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"freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }