{ "type": "genome", "identifier": "GCA_903896735.1", "organism": "uncultured Actinomycetes bacterium", "title": "uncultured Actinomycetes bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903896735.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6955632", "wgs_master": "CAITYZ000000000.1", "refseq_category": "na", "taxid": "152507", "species_taxid": "152507", "organism_name": "uncultured Actinomycetes bacterium", "infraspecific_name": "", "isolate": "LaPlata_bin-3077", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/19", "asm_name": "freshwater MAG --- LaPlata_bin-3077", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/896/735/GCA_903896735.1_freshwater_MAG_---_LaPlata_bin-3077", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-19", "dateModified": "2020-07-19", "datePublished": "2020-07-19", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Actinomycetes bacterium" ], "sample_taxid": [ "152507" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Puerto Rico" ], "sample_host_location_id": [], "data_size": "0.992 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3749476", "Number of Sequences": "396", "Longest Sequences (bp)": "46845", "N50 (bp)": "14603", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.2", "Number of CDSs": "3083", "Average Protein Length": "333.9", "Coding Ratio (%)": "82.4", "Number of rRNAs": "1", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhabdothermincola salaria", "strain": "strain=EGI L10124", "accession": "GCA_021246445.1", "taxid": 2903142, "species_taxid": 2903142, "relation_to_type": "type", "validated": true, "ani": 77.247, "matched_fragments": 306, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomarinicola tropica", "strain": "strain=SCSIO 58843", "accession": "GCA_009650215.1", "taxid": 2789776, "species_taxid": 2789776, "relation_to_type": "type", "validated": true, "ani": 77.2201, "matched_fragments": 296, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdothermincola sediminis", "strain": "strain=SYSU G02662", "accession": "GCA_014805525.1", "taxid": 2751370, "species_taxid": 2751370, "relation_to_type": "type", "validated": true, "ani": 77.0888, "matched_fragments": 251, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilumatobacter fluminis", "strain": "strain=DSM 18936", "accession": "GCA_004364865.1", "taxid": 467091, "species_taxid": 467091, "relation_to_type": "type", "validated": true, "ani": 76.5148, "matched_fragments": 183, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilumatobacter coccineus", "strain": "strain=YM16-304", "accession": "GCA_000348785.1", "taxid": 467094, "species_taxid": 467094, "relation_to_type": "type", "validated": true, "ani": 76.2939, "matched_fragments": 160, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Motilibacter peucedani", "strain": "strain=RP-AC37", "accession": "GCA_003634695.1", "taxid": 598650, "species_taxid": 598650, "relation_to_type": "type", "validated": true, "ani": 75.455, "matched_fragments": 179, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudactinotalea suaedae", "strain": "strain=KACC 17839", "accession": "GCA_009733815.1", "taxid": 1524924, "species_taxid": 1524924, "relation_to_type": "type", "validated": true, "ani": 75.3589, "matched_fragments": 139, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerisporangium rufum", "strain": "strain=NBRC 109079", "accession": "GCA_016863395.1", "taxid": 1381558, "species_taxid": 1381558, "relation_to_type": "type", "validated": true, "ani": 75.2841, "matched_fragments": 273, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frankia soli", "strain": "strain=NRRL B-16219", "accession": "GCA_001854695.1", "taxid": 2599596, "species_taxid": 2599596, "relation_to_type": "type", "validated": true, "ani": 75.2693, "matched_fragments": 184, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces mediolanus", "strain": "strain=JCM 3346", "accession": "GCA_014648575.1", "taxid": 41986, "species_taxid": 41986, "relation_to_type": "type", "validated": true, "ani": 75.2385, "matched_fragments": 165, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces chartreusis", "strain": "strain=ATCC 14922", "accession": "GCA_008704715.1", "taxid": 1969, "species_taxid": 1969, "relation_to_type": "suspected-type", "validated": true, "ani": 75.2278, "matched_fragments": 225, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium roseum", "strain": "strain=NRRL B-16295", "accession": "GCA_025264685.1", "taxid": 47989, "species_taxid": 47989, "relation_to_type": "type", "validated": true, "ani": 75.2232, "matched_fragments": 223, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces violascens", "strain": "strain=NBRC 12920", "accession": "GCA_020521295.1", "taxid": 67381, "species_taxid": 67381, "relation_to_type": "type", "validated": true, "ani": 75.2082, "matched_fragments": 180, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces violascens", "strain": "strain=JCM 4424", "accession": "GCA_014649955.1", "taxid": 67381, "species_taxid": 67381, "relation_to_type": "type", "validated": true, "ani": 75.1977, "matched_fragments": 183, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis camponoti", "strain": "strain=A23", "accession": "GCA_902497555.1", "taxid": 2606593, "species_taxid": 2606593, "relation_to_type": "type", "validated": true, "ani": 75.197, "matched_fragments": 237, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoallomurus spadix", "strain": "strain=KCTC 9252", "accession": "GCA_024055725.1", "taxid": 79912, "species_taxid": 79912, "relation_to_type": "type", "validated": true, "ani": 75.1942, "matched_fragments": 196, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura algeriensis", "strain": "strain=DSM 46744", "accession": "GCA_014873935.1", "taxid": 1679523, "species_taxid": 1679523, "relation_to_type": "type", "validated": true, "ani": 75.1853, "matched_fragments": 250, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura madurae", "strain": "strain=DSM 43067", "accession": "GCA_900115095.1", "taxid": 1993, "species_taxid": 1993, "relation_to_type": "type", "validated": true, "ani": 75.1831, "matched_fragments": 249, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium fulvum", "strain": "strain=NRRL B-16292", "accession": "GCA_025137375.1", "taxid": 53359, "species_taxid": 53359, "relation_to_type": "type", "validated": true, "ani": 75.1666, "matched_fragments": 253, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgisporangium ochraceum", "strain": "strain=NBRC 16418", "accession": "GCA_016863655.1", "taxid": 65505, "species_taxid": 65505, "relation_to_type": "type", "validated": true, "ani": 75.1648, "matched_fragments": 313, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium aurantiacum", "strain": "strain=NRRL B-8018", "accession": "GCA_025264705.1", "taxid": 35754, "species_taxid": 35754, "relation_to_type": "type", "validated": true, "ani": 75.1298, "matched_fragments": 326, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium aurantiacum", "strain": "strain=NRRL B-8018", "accession": "GCA_000716715.1", "taxid": 35754, "species_taxid": 35754, "relation_to_type": "type", "validated": true, "ani": 75.1241, "matched_fragments": 323, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frankia discariae", "strain": "strain=BCU110501", "accession": "GCA_000373365.1", "taxid": 365528, "species_taxid": 365528, "relation_to_type": "type", "validated": true, "ani": 75.1029, "matched_fragments": 210, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frankia irregularis", "strain": "strain=DSM 45899", "accession": "GCA_001536285.1", "taxid": 795642, "species_taxid": 795642, "relation_to_type": "type", "validated": true, "ani": 75.0938, "matched_fragments": 221, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes flavus", "strain": "strain=NEAU-H7", "accession": "GCA_017592555.1", "taxid": 2820290, "species_taxid": 2820290, "relation_to_type": "type", "validated": true, "ani": 75.0835, "matched_fragments": 234, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces roseirectus", "strain": "strain=CRXT-G-22", "accession": "GCA_014489635.1", "taxid": 2768066, "species_taxid": 2768066, "relation_to_type": "type", "validated": true, "ani": 75.0446, "matched_fragments": 202, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903868545.1", "gtdb_species": "s__CAIPVR01 sp903868545", "ani": 99.5168, "matched_fragments": 887, "total_fragments": 1032, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__CAIPVR01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.51", "min_intra_species_ani": "99.50", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.86", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_003962875.1", "gtdb_species": "s__AWTP1-35 sp003962875", "ani": 79.2499, "matched_fragments": 374, "total_fragments": 1032, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__AWTP1-35", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903873135.1", "gtdb_species": "s__SXMI01 sp903873135", "ani": 79.2475, "matched_fragments": 441, "total_fragments": 1032, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__SXMI01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.54", "min_intra_species_ani": "99.49", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCA_903941145.1", "gtdb_species": "s__CAJANQ01 sp903941145", "ani": 79.0682, "matched_fragments": 290, "total_fragments": 1032, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__CAJANQ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.35", "min_intra_species_ani": "98.35", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.80", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903852755.1", "gtdb_species": "s__SXMI01 sp903852755", "ani": 78.9643, "matched_fragments": 413, "total_fragments": 1032, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__SXMI01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.71", "min_intra_species_ani": "99.61", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCA_018268735.1", "gtdb_species": "s__AWTP1-35 sp018268735", "ani": 78.9269, "matched_fragments": 243, "total_fragments": 1032, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__AWTP1-35", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903925745.1", "gtdb_species": "s__SXMI01 sp903925745", "ani": 78.6955, "matched_fragments": 424, "total_fragments": 1032, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__SXMI01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005777415.1", "gtdb_species": "s__SXMI01 sp005777415", "ani": 78.5399, "matched_fragments": 325, "total_fragments": 1032, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__SXMI01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.41", "min_intra_species_ani": "99.40", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_007118345.1", "gtdb_species": "s__SKRR01 sp007118345", "ani": 78.3159, "matched_fragments": 331, "total_fragments": 1032, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__SKRR01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016649895.1", "gtdb_species": "s__Actinomarinicola sp016649895", "ani": 77.2953, "matched_fragments": 218, "total_fragments": 1032, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__SKKL01;g__Actinomarinicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009650215.1", "gtdb_species": "s__Actinomarinicola tropica", "ani": 77.1497, "matched_fragments": 303, "total_fragments": 1032, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__SKKL01;g__Actinomarinicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009733815.1", "gtdb_species": "s__Pseudactinotalea suaedae", "ani": 75.3348, "matched_fragments": 143, "total_fragments": 1032, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Pseudactinotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014649955.1", "gtdb_species": "s__Streptomyces violascens", "ani": 75.2055, "matched_fragments": 181, "total_fragments": 1032, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001279695.1", "gtdb_species": "s__Streptomyces sp001279695", "ani": 75.1468, "matched_fragments": 181, "total_fragments": 1032, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000381925.1", "gtdb_species": "s__Nocardia sp000381925", "ani": 75.0868, "matched_fragments": 165, "total_fragments": 1032, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014489635.1", "gtdb_species": "s__Streptomyces sp014489635", "ani": 75.0358, "matched_fragments": 201, "total_fragments": 1032, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Actinomycetota", "c__Acidimicrobiia", "o__Acidimicrobiales", "f__Microtrichaceae", "g__CAIPVR01", "s__CAIPVR01 sp903868545" ], "_genome_taxon": [ "uncultured", "Actinomycetes", "bacterium", "d__Bacteria", "p__Actinomycetota", "c__Acidimicrobiia", "o__Acidimicrobiales", "f__Microtrichaceae", "g__CAIPVR01", "s__CAIPVR01 sp903868545", "Bacteria", "Actinomycetota", "Acidimicrobiia", "Acidimicrobiales", "Microtrichaceae", "CAIPVR01", "CAIPVR01", "sp903868545" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }