{ "type": "genome", "identifier": "GCA_903896985.1", "organism": "uncultured Sandaracinus sp.", "title": "uncultured Sandaracinus sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903896985.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6947190", "wgs_master": "CAIUAC000000000.1", "refseq_category": "na", "taxid": "1331297", "species_taxid": "1331297", "organism_name": "uncultured Sandaracinus sp.", "infraspecific_name": "", "isolate": "LJ-7-9m_bin-0205", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/20", "asm_name": "freshwater MAG --- LJ-7-9m_bin-0205", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/896/985/GCA_903896985.1_freshwater_MAG_---_LJ-7-9m_bin-0205", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-20", "dateModified": "2020-07-20", "datePublished": "2020-07-20", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Sandaracinus sp." ], "sample_taxid": [ "1331297" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "1.659 MB", "sample_ph_range": { "min": 674.0, "max": 674.0 }, "sample_temperature_range": { "min": 49.0, "max": 49.0 }, "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "6207720", "Number of Sequences": "1332", "Longest Sequences (bp)": "38153", "N50 (bp)": "5716", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.4", "Number of CDSs": "4036", "Average Protein Length": "331.1", "Coding Ratio (%)": "64.6", "Number of rRNAs": "0", "Number of tRNAs": "54", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sandaracinus amylolyticus", "strain": "strain=DSM 53668", "accession": "GCA_000737325.2", "taxid": 927083, "species_taxid": 927083, "relation_to_type": "type", "validated": true, "ani": 76.5149, "matched_fragments": 758, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polyangium fumosum", "strain": "strain=DSM 14668", "accession": "GCA_005144585.1", "taxid": 889272, "species_taxid": 889272, "relation_to_type": "neotype", "validated": true, "ani": 75.3587, "matched_fragments": 456, 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"below_threshold" }, { "organism_name": "Anaeromyxobacter dehalogenans", "strain": "strain=2CP-1", "accession": "GCA_000022145.1", "taxid": 161493, "species_taxid": 161493, "relation_to_type": "type", "validated": true, "ani": 75.091, "matched_fragments": 305, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum aromaticum", "strain": "strain=EbN1", "accession": "GCA_000025965.1", "taxid": 551760, "species_taxid": 551760, "relation_to_type": "type", "validated": true, "ani": 74.9632, "matched_fragments": 111, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus soli", "strain": "strain=ZKHCc1 1396", "accession": "GCA_014930455.1", "taxid": 2710757, "species_taxid": 2710757, "relation_to_type": "type", "validated": true, "ani": 74.9271, "matched_fragments": 193, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus sicarius", "strain": "strain=CA040B", "accession": "GCA_003611735.1", "taxid": 2316726, "species_taxid": 2316726, "relation_to_type": "type", "validated": true, "ani": 74.918, "matched_fragments": 191, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nannocystis exedens", "strain": "strain=DSM 71", "accession": "GCA_002343915.1", "taxid": 54, "species_taxid": 54, "relation_to_type": "type", "validated": true, "ani": 74.9136, "matched_fragments": 440, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nannocystis exedens", "strain": "strain=ATCC 25963", "accession": "GCA_900112715.1", "taxid": 54, "species_taxid": 54, "relation_to_type": "type", "validated": true, "ani": 74.9076, "matched_fragments": 417, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haliangium ochraceum", "strain": "strain=DSM 14365", "accession": "GCA_000024805.1", "taxid": 80816, "species_taxid": 80816, "relation_to_type": "type", "validated": true, "ani": 74.8962, "matched_fragments": 325, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas composti", "strain": "strain=DSM 18010", "accession": "GCA_000426365.1", "taxid": 370776, "species_taxid": 370776, "relation_to_type": "type", "validated": true, "ani": 74.8588, "matched_fragments": 143, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter segetis", "strain": "strain=17J68-2", "accession": "GCA_004359965.1", "taxid": 2492394, "species_taxid": 2492394, "relation_to_type": "type", "validated": true, "ani": 74.8394, "matched_fragments": 152, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas malthae", "strain": "strain=CC-JY-1", "accession": "GCA_000747075.1", "taxid": 354197, "species_taxid": 354197, "relation_to_type": "type", "validated": true, "ani": 74.8052, "matched_fragments": 91, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureimonas leprariae", "strain": "strain=YIM 132180", "accession": "GCA_008802405.1", "taxid": 2615207, "species_taxid": 2615207, "relation_to_type": "type", "validated": true, "ani": 74.8021, "matched_fragments": 157, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malikia granosa", "strain": "strain=P1", "accession": "GCA_002980595.1", "taxid": 263067, "species_taxid": 263067, "relation_to_type": "type", "validated": true, "ani": 74.7967, "matched_fragments": 88, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium flavescens", "strain": "strain=JCM 3877", "accession": "GCA_018588945.1", "taxid": 69366, "species_taxid": 69366, "relation_to_type": "type", "validated": true, "ani": 74.779, "matched_fragments": 142, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces allii", "strain": "strain=JCM 13584", "accession": "GCA_009749385.1", "taxid": 393607, "species_taxid": 393607, "relation_to_type": "type", "validated": true, "ani": 74.7587, "matched_fragments": 231, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas ginkgonis", "strain": "strain=HMF7854", "accession": "GCA_003970925.1", "taxid": 2315330, "species_taxid": 2315330, "relation_to_type": "type", "validated": true, "ani": 74.7504, "matched_fragments": 93, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas solaris", "strain": "strain=R4DWN", "accession": "GCA_007785815.1", "taxid": 2529389, "species_taxid": 2529389, "relation_to_type": "type", "validated": true, "ani": 74.7444, "matched_fragments": 88, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fulva", "strain": "strain=DKR-3", "accession": "GCA_018531375.1", "taxid": 2835530, "species_taxid": 2835530, "relation_to_type": "type", "validated": true, "ani": 74.7418, "matched_fragments": 239, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimonas soli", "strain": "strain=LMG 19981", "accession": "GCA_006352285.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 74.7086, "matched_fragments": 156, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmata obscuriglobus", "strain": "strain=DSM 5831", "accession": "GCA_008065095.1", "taxid": 114, "species_taxid": 114, "relation_to_type": "type", "validated": true, "ani": 74.6577, "matched_fragments": 117, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmata obscuriglobus", "strain": 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114, "relation_to_type": "type", "validated": true, "ani": 74.6383, "matched_fragments": 113, "total_fragments": 1335, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000737325.1", "gtdb_species": "s__Sandaracinus amylolyticus", "ani": 76.5333, "matched_fragments": 751, "total_fragments": 1335, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__Sandaracinaceae;g__Sandaracinus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017303575.1", "gtdb_species": "s__JAFLCL01 sp017303575", "ani": 76.3384, "matched_fragments": 553, "total_fragments": 1335, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__Sandaracinaceae;g__JAFLCL01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903828805.1", "gtdb_species": "s__Sandaracinus sp903828805", "ani": 76.2357, "matched_fragments": 361, "total_fragments": 1335, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__Sandaracinaceae;g__Sandaracinus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012744445.1", "gtdb_species": "s__JAAYBZ01 sp012744445", "ani": 76.0689, "matched_fragments": 306, "total_fragments": 1335, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__SG8-38;g__JAAYBZ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016712745.1", "gtdb_species": "s__JADJQN01 sp016712745", "ani": 76.0314, "matched_fragments": 160, "total_fragments": 1335, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__JADJQN01;g__JADJQN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002699025.1", "gtdb_species": "s__GCA-2699025 sp002699025", "ani": 75.8769, "matched_fragments": 550, "total_fragments": 1335, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__SG8-38;g__GCA-2699025", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.90", "min_intra_species_ani": "99.85", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_017644045.1", "gtdb_species": "s__UBA1660 sp017644045", "ani": 75.8698, "matched_fragments": 427, "total_fragments": 1335, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__SG8-38;g__UBA1660", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017881055.1", "gtdb_species": "s__JADGRF01 sp017881055", "ani": 75.8303, "matched_fragments": 238, "total_fragments": 1335, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__JAFGIB01;g__JADGRF01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": 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