{ "type": "genome", "identifier": "GCA_903898495.1", "organism": "uncultured beta proteobacterium", "title": "uncultured beta proteobacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903898495.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6950800", "wgs_master": "CAIUFQ000000000.1", "refseq_category": "na", "taxid": "86027", "species_taxid": "86027", "organism_name": "uncultured beta proteobacterium", "infraspecific_name": "", "isolate": "MJ130702A_bin-175", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/18", "asm_name": "freshwater MAG --- MJ130702A_bin-175", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/898/495/GCA_903898495.1_freshwater_MAG_---_MJ130702A_bin-175", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-18", "dateModified": "2020-07-18", "datePublished": "2020-07-18", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured beta proteobacterium" ], "sample_taxid": [ "86027" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "0.781 MB", "sample_ph_range": { "min": 583.0, "max": 583.0 }, "sample_temperature_range": { "min": 58.0, "max": 58.0 }, "completeness": 38.83, "contamination": 5.21, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2735557", "Number of Sequences": "831", "Longest Sequences (bp)": "16169", "N50 (bp)": "3644", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.2", "Number of CDSs": "1857", "Average Protein Length": "286.1", "Coding Ratio (%)": "58.3", "Number of rRNAs": "0", "Number of tRNAs": "10", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodoferax ferrireducens", "strain": "strain=DSM 15236", "accession": "GCA_000013605.1", "taxid": 192843, "species_taxid": 192843, "relation_to_type": "type", "validated": true, "ani": 78.5712, "matched_fragments": 146, "total_fragments": 443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaromonas jejuensis", "strain": "strain=NBRC 106434", "accession": "GCA_001598235.1", "taxid": 457502, "species_taxid": 457502, "relation_to_type": "type", "validated": true, "ani": 78.2126, "matched_fragments": 107, 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"below_threshold" }, { "organism_name": "Rhodoferax fermentans", "strain": "strain=DSM 10138", "accession": "GCA_016583655.1", "taxid": 28066, "species_taxid": 28066, "relation_to_type": "type", "validated": true, "ani": 77.8515, "matched_fragments": 94, "total_fragments": 443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax fermentans", "strain": "strain=JCM 7819", "accession": "GCA_002017865.1", "taxid": 28066, "species_taxid": 28066, "relation_to_type": "type", "validated": true, "ani": 77.8453, "matched_fragments": 94, "total_fragments": 443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga palleronii", "strain": "strain=NBRC 102513", "accession": "GCA_001571225.1", "taxid": 65655, "species_taxid": 65655, "relation_to_type": "type", "validated": true, "ani": 77.6862, "matched_fragments": 107, "total_fragments": 443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax radicis", 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