{ "type": "genome", "identifier": "GCA_903898955.1", "organism": "uncultured Oscillochloris sp.", "title": "uncultured Oscillochloris sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903898955.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6956799", "wgs_master": "CAIUHR000000000.1", "refseq_category": "na", "taxid": "543045", "species_taxid": "543045", "organism_name": "uncultured Oscillochloris sp.", "infraspecific_name": "", "isolate": "LJ_bin-0871", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/20", "asm_name": "freshwater MAG --- LJ_bin-0871", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/898/955/GCA_903898955.1_freshwater_MAG_---_LJ_bin-0871", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-20", "dateModified": "2020-07-20", "datePublished": "2020-07-20", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Oscillochloris sp." ], "sample_taxid": [ "543045" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "1.331 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.33, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", 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1230, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium terricola", "strain": "strain=17Sr1-39", "accession": "GCA_006151805.1", "taxid": 2583531, "species_taxid": 2583531, "relation_to_type": "type", "validated": true, "ani": 74.7265, "matched_fragments": 54, "total_fragments": 1230, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.33, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_903877945.1", "gtdb_species": "s__Oscillochloris sp903877945", "ani": 99.4036, "matched_fragments": 967, "total_fragments": 1230, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Chloroflexaceae;g__Oscillochloris", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.99", "min_intra_species_ani": "98.27", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.73", "num_clustered_genomes": 10, "status": "conclusive" }, { "accession": 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"spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Chloroflexota", "c__Chloroflexia", "o__Chloroflexales", "f__Chloroflexaceae", "g__Oscillochloris", "s__Oscillochloris sp903877945" ], "_genome_taxon": [ "uncultured", "Oscillochloris", "sp.", "d__Bacteria", "p__Chloroflexota", "c__Chloroflexia", "o__Chloroflexales", "f__Chloroflexaceae", "g__Oscillochloris", "s__Oscillochloris sp903877945", "Bacteria", "Chloroflexota", "Chloroflexia", "Chloroflexales", "Chloroflexaceae", "Oscillochloris", "Oscillochloris", "sp903877945" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }