{
    "type": "genome",
    "identifier": "GCA_903900535.1",
    "organism": "uncultured Verrucomicrobiota bacterium",
    "title": "uncultured Verrucomicrobiota bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "BILS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_903900535.1",
        "bioproject": "PRJEB38681",
        "biosample": "SAMEA6949458",
        "wgs_master": "CAIUNL000000000.1",
        "refseq_category": "na",
        "taxid": "156588",
        "species_taxid": "156588",
        "organism_name": "uncultured Verrucomicrobiota bacterium",
        "infraspecific_name": "",
        "isolate": "Erken-D4_bin-0935",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/18",
        "asm_name": "freshwater MAG --- Erken-D4_bin-0935",
        "submitter": "BILS",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/900/535/GCA_903900535.1_freshwater_MAG_---_Erken-D4_bin-0935",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-18",
    "dateModified": "2020-07-18",
    "datePublished": "2020-07-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Verrucomicrobiota bacterium"
        ],
        "sample_taxid": [
            "156588"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Sweden"
        ],
        "sample_host_location_id": [],
        "data_size": "0.820 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": 181.0,
            "max": 181.0
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2861286",
        "Number of Sequences": "285",
        "Longest Sequences (bp)": "56387",
        "N50 (bp)": "18082",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "56.9",
        "Number of CDSs": "2200",
        "Average Protein Length": "342.6",
        "Coding Ratio (%)": "79.0",
        "Number of rRNAs": "1",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Opitutus terrae",
                "strain": "strain=PB90-1",
                "accession": "GCA_000019965.1",
                "taxid": 107709,
                "species_taxid": 107709,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.738,
                "matched_fragments": 56,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nibricoccus aquaticus",
                "strain": "strain=HZ-65",
                "accession": "GCA_002310495.1",
                "taxid": 2576891,
                "species_taxid": 2576891,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7055,
                "matched_fragments": 54,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_005787865.1",
                "gtdb_species": "s__Lacunisphaera sp005787865",
                "ani": 96.5945,
                "matched_fragments": 459,
                "total_fragments": 807,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Lacunisphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.88",
                "min_intra_species_ani": "96.49",
                "mean_intra_species_af": "0.76",
                "min_intra_species_af": "0.70",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002304425.1",
                "gtdb_species": "s__Lacunisphaera sp002304425",
                "ani": 94.3742,
                "matched_fragments": 382,
                "total_fragments": 807,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Lacunisphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903906135.1",
                "gtdb_species": "s__Lacunisphaera sp903906135",
                "ani": 92.0001,
                "matched_fragments": 625,
                "total_fragments": 807,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Lacunisphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.45",
                "min_intra_species_ani": "98.45",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903856725.1",
                "gtdb_species": "s__Lacunisphaera sp903856725",
                "ani": 87.7618,
                "matched_fragments": 634,
                "total_fragments": 807,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Lacunisphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.44",
                "min_intra_species_ani": "98.84",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCA_903898675.1",
                "gtdb_species": "s__Lacunisphaera sp903898675",
                "ani": 77.9339,
                "matched_fragments": 129,
                "total_fragments": 807,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Lacunisphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_009695095.1",
                "gtdb_species": "s__Lacunisphaera sp009695095",
                "ani": 77.3231,
                "matched_fragments": 102,
                "total_fragments": 807,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Lacunisphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900104925.1",
                "gtdb_species": "s__Lacunisphaera sp900104925",
                "ani": 77.3132,
                "matched_fragments": 139,
                "total_fragments": 807,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Lacunisphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001746835.1",
                "gtdb_species": "s__Lacunisphaera limnophila",
                "ani": 77.2575,
                "matched_fragments": 113,
                "total_fragments": 807,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Lacunisphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903948415.1",
                "gtdb_species": "s__CAITWF01 sp903948415",
                "ani": 76.1144,
                "matched_fragments": 78,
                "total_fragments": 807,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__CAITWF01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Verrucomicrobiae",
        "o__Opitutales",
        "f__Opitutaceae",
        "g__Lacunisphaera",
        "s__Lacunisphaera sp005787865"
    ],
    "_genome_taxon": [
        "uncultured",
        "Verrucomicrobiota",
        "bacterium",
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Verrucomicrobiae",
        "o__Opitutales",
        "f__Opitutaceae",
        "g__Lacunisphaera",
        "s__Lacunisphaera sp005787865",
        "Bacteria",
        "Verrucomicrobiota",
        "Verrucomicrobiae",
        "Opitutales",
        "Opitutaceae",
        "Lacunisphaera",
        "Lacunisphaera",
        "sp005787865"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}