{ "type": "genome", "identifier": "GCA_903900545.1", "organism": "uncultured beta proteobacterium", "title": "uncultured beta proteobacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903900545.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6949320", "wgs_master": "CAIUNI000000000.1", "refseq_category": "na", "taxid": "86027", "species_taxid": "86027", "organism_name": "uncultured beta proteobacterium", "infraspecific_name": "", "isolate": "Day6-4_bin-048", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/19", "asm_name": "freshwater MAG --- Day6-4_bin-048", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/900/545/GCA_903900545.1_freshwater_MAG_---_Day6-4_bin-048", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-19", "dateModified": "2020-07-19", "datePublished": "2020-07-19", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured beta proteobacterium" ], "sample_taxid": [ "86027" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "1.002 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 3.0, "max": 3.0 }, "completeness": 96.76, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3579851", "Number of Sequences": "157", "Longest Sequences (bp)": "118064", "N50 (bp)": "39514", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.3", "Number of CDSs": "3221", "Average Protein Length": "318.2", "Coding Ratio (%)": "85.9", "Number of rRNAs": "1", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sulfurisoma sediminicola", "strain": "strain=DSM 26916", "accession": "GCA_003663955.1", "taxid": 1381557, "species_taxid": 1381557, "relation_to_type": "type", "validated": true, "ani": 79.8656, "matched_fragments": 431, "total_fragments": 1121, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurisoma sediminicola", "strain": "strain=BSN1", "accession": "GCA_003865015.1", "taxid": 1381557, "species_taxid": 1381557, "relation_to_type": "type", "validated": true, "ani": 79.8605, "matched_fragments": 428, "total_fragments": 1121, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Georgfuchsia toluolica", "strain": "strain=G5G6", "accession": "GCA_907163265.1", "taxid": 424218, "species_taxid": 424218, "relation_to_type": "type", "validated": true, "ani": 78.5249, "matched_fragments": 280, "total_fragments": 1121, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sterolibacterium denitrificans", "strain": "strain=DSM 13999", "accession": "GCA_001586935.1", "taxid": 157592, "species_taxid": 157592, "relation_to_type": "type", "validated": true, "ani": 78.3968, "matched_fragments": 128, "total_fragments": 1121, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera butanivorans", "strain": "strain=NBRC 103042", "accession": "GCA_001591165.1", "taxid": 86174, "species_taxid": 86174, "relation_to_type": "type", "validated": true, "ani": 78.1201, "matched_fragments": 346, "total_fragments": 1121, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azoarcus rhizosphaerae", "strain": "strain=CC-YHH848", "accession": "GCA_004801305.1", "taxid": 2565932, "species_taxid": 2565932, "relation_to_type": "type", "validated": true, "ani": 78.0419, "matched_fragments": 309, "total_fragments": 1121, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Denitratisoma oestradiolicum", "strain": "strain=DSM 16959", "accession": "GCA_007844305.1", "taxid": 311182, "species_taxid": 311182, "relation_to_type": "type", "validated": true, "ani": 78.0269, "matched_fragments": 301, "total_fragments": 1121, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Denitratisoma oestradiolicum", "strain": "strain=DSM 16959", "accession": "GCA_902813185.1", "taxid": 311182, "species_taxid": 311182, "relation_to_type": "type", "validated": true, "ani": 78.0018, "matched_fragments": 307, "total_fragments": 1121, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera chlorobenzoica", "strain": "strain=3CB-1", "accession": "GCA_900108255.1", "taxid": 96773, "species_taxid": 96773, "relation_to_type": "type", "validated": true, "ani": 77.8792, "matched_fragments": 295, "total_fragments": 1121, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera propionica", "strain": "strain=KNDSS-Mac4", "accession": "GCA_002245655.1", "taxid": 2019431, "species_taxid": 2019431, "relation_to_type": "type", "validated": true, "ani": 77.6686, "matched_fragments": 277, "total_fragments": 1121, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera linaloolentis", "strain": "strain=DSM 12138", "accession": "GCA_000621305.1", "taxid": 76112, "species_taxid": 76112, "relation_to_type": "type", "validated": true, "ani": 77.6413, "matched_fragments": 312, "total_fragments": 1121, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera phenolivorans", "strain": "strain=ZV1C", "accession": "GCA_001696715.1", "taxid": 1792543, "species_taxid": 1792543, "relation_to_type": "type", "validated": true, "ani": 77.5409, "matched_fragments": 285, "total_fragments": 1121, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum anaerobium", "strain": "strain=LuFRes1", "accession": "GCA_012910705.2", "taxid": 182180, "species_taxid": 182180, "relation_to_type": "type", "validated": true, "ani": 77.4038, "matched_fragments": 247, "total_fragments": 1121, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum toluolicum", "strain": "strain=T", "accession": "GCA_012911005.2", "taxid": 90060, "species_taxid": 90060, "relation_to_type": "type", "validated": true, "ani": 77.3042, "matched_fragments": 322, "total_fragments": 1121, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum buckelii", "strain": "strain=U120", "accession": "GCA_012910785.2", "taxid": 200254, 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