{ "type": "genome", "identifier": "GCA_903900705.1", "organism": "uncultured Acidobacteriia bacterium", "title": "uncultured Acidobacteriia bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903900705.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6953427", "wgs_master": "CAIUOG000000000.1", "refseq_category": "na", "taxid": "2569093", "species_taxid": "2569093", "organism_name": "uncultured Acidobacteriia bacterium", "infraspecific_name": "", "isolate": "Umea3p3_bin-0089", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/20", "asm_name": "freshwater MAG --- Umea3p3_bin-0089", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/900/705/GCA_903900705.1_freshwater_MAG_---_Umea3p3_bin-0089", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-20", "dateModified": "2020-07-20", "datePublished": "2020-07-20", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Acidobacteriia bacterium" ], "sample_taxid": [ "2569093" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "1.727 MB", "sample_ph_range": { "min": 495.0, "max": 495.0 }, "sample_temperature_range": { "min": 41.0, "max": 41.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "6108339", "Number of Sequences": "179", "Longest Sequences (bp)": "154775", "N50 (bp)": "57537", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.6", "Number of CDSs": "5112", "Average Protein Length": "363.1", "Coding Ratio (%)": "91.2", "Number of rRNAs": "2", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bryobacter aggregatus", "strain": "strain=MPL3", "accession": "GCA_000702445.1", "taxid": 360054, "species_taxid": 360054, "relation_to_type": "type", "validated": true, "ani": 76.077, "matched_fragments": 63, "total_fragments": 1951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracidobacterium acidisoli", "strain": "strain=4G-K13", "accession": "GCA_003428625.2", "taxid": 2303751, "species_taxid": 2303751, "relation_to_type": "type", "validated": true, "ani": 76.0345, "matched_fragments": 63, "total_fragments": 1951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paludibaculum fermentans", "strain": "strain=P105", "accession": "GCA_015277775.1", "taxid": 1473598, "species_taxid": 1473598, "relation_to_type": "type", "validated": true, "ani": 75.867, "matched_fragments": 137, "total_fragments": 1951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidobacterium capsulatum", "strain": "strain=ATCC 51196", "accession": "GCA_000022565.1", "taxid": 33075, "species_taxid": 33075, "relation_to_type": "type", "validated": true, "ani": 75.8128, "matched_fragments": 53, "total_fragments": 1951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Edaphobacter aggregans", "strain": "strain=DSM 19364", "accession": "GCA_000745965.1", "taxid": 570835, "species_taxid": 570835, "relation_to_type": "type", "validated": true, "ani": 75.7742, "matched_fragments": 56, "total_fragments": 1951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silvibacterium dinghuense", "strain": "strain=DHOF10", "accession": "GCA_004123295.1", "taxid": 1560006, "species_taxid": 1560006, "relation_to_type": "type", "validated": true, "ani": 75.5647, "matched_fragments": 68, "total_fragments": 1951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silvibacterium dinghuense", "strain": "strain=CGMCC 1.13007", "accession": "GCA_014640355.1", "taxid": 1560006, "species_taxid": 1560006, "relation_to_type": "type", "validated": true, "ani": 75.5275, "matched_fragments": 68, "total_fragments": 1951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Granulicella pectinivorans", "strain": "strain=DSM 21001", "accession": "GCA_900114625.1", "taxid": 474950, "species_taxid": 474950, "relation_to_type": "type", "validated": true, "ani": 75.4539, "matched_fragments": 65, "total_fragments": 1951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax wautersii", "strain": "strain=DSM 27981", "accession": "GCA_900113035.1", "taxid": 1177982, "species_taxid": 1177982, "relation_to_type": "type", "validated": true, "ani": 75.1054, "matched_fragments": 51, "total_fragments": 1951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caballeronia glathei", "strain": "strain=DSM 50014", "accession": "GCA_000698595.1", "taxid": 60547, "species_taxid": 60547, "relation_to_type": "type", "validated": true, "ani": 75.0315, "matched_fragments": 58, "total_fragments": 1951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caballeronia glathei", "strain": "strain=LMG 14190", "accession": "GCA_000751215.2", "taxid": 60547, "species_taxid": 60547, "relation_to_type": "type", "validated": true, "ani": 75.0169, "matched_fragments": 59, "total_fragments": 1951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia phosphatilytica", "strain": "strain=7QSK02", "accession": "GCA_003443895.1", "taxid": 2282883, "species_taxid": 2282883, "relation_to_type": "type", "validated": true, "ani": 74.9291, "matched_fragments": 55, "total_fragments": 1951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter aquaticus", "strain": "strain=DSM 101", "accession": "GCA_004339465.1", "taxid": 100, "species_taxid": 100, "relation_to_type": "type", "validated": true, "ani": 74.8268, "matched_fragments": 55, "total_fragments": 1951, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903900705.1", "gtdb_species": "s__BOG-234 sp903900705", "ani": 100.0, "matched_fragments": 1938, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Bryobacterales;f__Bryobacteraceae;g__BOG-234", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.75", "min_intra_species_ani": "99.40", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCA_903851195.1", "gtdb_species": "s__BOG-234 sp903851195", "ani": 78.5986, "matched_fragments": 777, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Bryobacterales;f__Bryobacteraceae;g__BOG-234", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_903929755.1", "gtdb_species": "s__BOG-234 sp903929755", "ani": 77.4381, "matched_fragments": 344, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Bryobacterales;f__Bryobacteraceae;g__BOG-234", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.18", "min_intra_species_ani": "98.36", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_903828455.1", "gtdb_species": "s__BOG-234 sp903828455", "ani": 77.3775, "matched_fragments": 310, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Bryobacterales;f__Bryobacteraceae;g__BOG-234", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903875575.1", "gtdb_species": "s__BOG-234 sp903875575", "ani": 77.1899, "matched_fragments": 256, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Bryobacterales;f__Bryobacteraceae;g__BOG-234", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_903907865.1", "gtdb_species": "s__BOG-234 sp903907865", "ani": 77.1104, "matched_fragments": 424, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Bryobacterales;f__Bryobacteraceae;g__BOG-234", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.98", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_010084195.1", "gtdb_species": "s__BOG-234 sp010084195", "ani": 77.0909, "matched_fragments": 284, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Bryobacterales;f__Bryobacteraceae;g__BOG-234", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903925015.1", "gtdb_species": "s__BOG-234 sp903925015", "ani": 76.9259, "matched_fragments": 297, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Bryobacterales;f__Bryobacteraceae;g__BOG-234", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903893525.1", "gtdb_species": "s__BOG-234 sp903893525", "ani": 76.9031, "matched_fragments": 277, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Bryobacterales;f__Bryobacteraceae;g__BOG-234", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903825445.1", "gtdb_species": "s__BOG-234 sp903825445", "ani": 76.6448, "matched_fragments": 220, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Bryobacterales;f__Bryobacteraceae;g__BOG-234", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903923395.1", "gtdb_species": "s__BOG-234 sp903923395", "ani": 76.6227, "matched_fragments": 250, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Bryobacterales;f__Bryobacteraceae;g__BOG-234", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017883345.1", "gtdb_species": "s__Solibacter sp017883345", "ani": 76.4238, "matched_fragments": 119, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Bryobacterales;f__Bryobacteraceae;g__Solibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000022565.1", "gtdb_species": "s__Acidobacterium capsulatum", "ani": 75.8373, "matched_fragments": 52, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Acidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003152325.1", "gtdb_species": "s__PALSA-129 sp003152325", "ani": 75.8355, "matched_fragments": 113, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Bryobacterales;f__Bryobacteraceae;g__PALSA-129", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003167255.1", "gtdb_species": "s__PALSA-129 sp003167255", "ani": 75.813, "matched_fragments": 164, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Bryobacterales;f__Bryobacteraceae;g__PALSA-129", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003166475.1", "gtdb_species": "s__Bog-159 sp003166475", "ani": 75.7257, "matched_fragments": 119, "total_fragments": 1951, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Bryobacterales;f__Bryobacteraceae;g__Bog-159", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.58", "min_intra_species_ani": "99.43", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.86", "num_clustered_genomes": 9, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Acidobacteriota", "c__Terriglobia", "o__Bryobacterales", "f__Bryobacteraceae", "g__BOG-234", "s__BOG-234 sp903900705" ], "_genome_taxon": [ "uncultured", "Acidobacteriia", "bacterium", "d__Bacteria", "p__Acidobacteriota", "c__Terriglobia", "o__Bryobacterales", "f__Bryobacteraceae", "g__BOG-234", "s__BOG-234 sp903900705", "Bacteria", "Acidobacteriota", "Terriglobia", "Bryobacterales", "Bryobacteraceae", "BOG-234", "BOG-234", "sp903900705" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }