{ "type": "genome", "identifier": "GCA_903906205.1", "organism": "uncultured Rhodanobacter sp.", "title": "uncultured Rhodanobacter sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903906205.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6953649", "wgs_master": "CAIVJP000000000.1", "refseq_category": "na", "taxid": "290594", "species_taxid": "290594", "organism_name": "uncultured Rhodanobacter sp.", "infraspecific_name": "", "isolate": "MJ-time_bin-3453", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/19", "asm_name": "freshwater MAG --- MJ-time_bin-3453", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/906/205/GCA_903906205.1_freshwater_MAG_---_MJ-time_bin-3453", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-19", "dateModified": "2020-07-19", "datePublished": "2020-07-19", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Rhodanobacter sp." ], "sample_taxid": [ "290594" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "0.887 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 33.33, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3141748", "Number of Sequences": "744", "Longest Sequences (bp)": "25823", "N50 (bp)": "5101", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.7", "Number of CDSs": "2225", "Average Protein Length": "286.6", "Coding Ratio (%)": "60.9", "Number of rRNAs": "1", "Number of tRNAs": "26", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodanobacter denitrificans", "strain": "strain=2APBS1", "accession": "GCA_000230695.3", "taxid": 666685, "species_taxid": 666685, "relation_to_type": "type", "validated": true, "ani": 80.3331, "matched_fragments": 295, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodanobacter panaciterrae", "strain": "strain=KCTC 22232", "accession": "GCA_014651895.1", "taxid": 490572, "species_taxid": 490572, "relation_to_type": "type", "validated": true, "ani": 80.2196, "matched_fragments": 296, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodanobacter spathiphylli", "strain": "strain=B39", "accession": "GCA_000264295.1", "taxid": 347483, "species_taxid": 347483, "relation_to_type": "type", "validated": true, "ani": 80.2154, "matched_fragments": 269, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodanobacter thiooxydans", "strain": "strain=LCS2", "accession": "GCA_000264375.1", "taxid": 416169, "species_taxid": 416169, "relation_to_type": "type", "validated": true, "ani": 79.8702, "matched_fragments": 287, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodanobacter fulvus", "strain": "strain=Jip2", "accession": "GCA_000264315.1", "taxid": 219571, "species_taxid": 219571, "relation_to_type": "type", "validated": true, "ani": 79.4645, "matched_fragments": 238, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimonas soli", "strain": "strain=LMG 19981", "accession": "GCA_006352285.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 79.2025, "matched_fragments": 254, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella solisilvae", "strain": "strain=DHG54", "accession": "GCA_003351225.1", "taxid": 1920168, "species_taxid": 1920168, "relation_to_type": "type", "validated": true, "ani": 78.7514, "matched_fragments": 225, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella amyloliquefaciens", "strain": "strain=DHC06", "accession": "GCA_004296575.1", "taxid": 1770545, "species_taxid": 1770545, "relation_to_type": "type", "validated": true, "ani": 78.6418, "matched_fragments": 231, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella acidiphila", "strain": "strain=7MK23", "accession": "GCA_014863405.1", "taxid": 2775866, "species_taxid": 2775866, "relation_to_type": "type", "validated": true, "ani": 78.5569, "matched_fragments": 254, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella telluris", "strain": "strain=G9", "accession": "GCA_014297575.1", "taxid": 2763498, "species_taxid": 2763498, "relation_to_type": "type", "validated": true, "ani": 78.4592, "matched_fragments": 245, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella japonica", "strain": "strain=DSM 16301", "accession": "GCA_001010355.1", "taxid": 231455, "species_taxid": 231455, "relation_to_type": "type", "validated": true, "ani": 78.4236, "matched_fragments": 232, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella mobilis", "strain": "strain=DHON07", "accession": "GCA_016904945.1", "taxid": 1849582, "species_taxid": 1849582, "relation_to_type": "type", "validated": true, "ani": 77.9718, "matched_fragments": 213, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella psychrodurans", "strain": "strain=4MSK11", "accession": "GCA_003363265.1", "taxid": 1927960, "species_taxid": 1927960, "relation_to_type": "type", "validated": true, "ani": 77.7369, "matched_fragments": 201, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella monticola", "strain": "strain=4 G-K06", "accession": "GCA_003363155.1", "taxid": 1927958, "species_taxid": 1927958, "relation_to_type": "type", "validated": true, "ani": 77.1918, "matched_fragments": 177, "total_fragments": 628, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 33.33, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_014200755.1", "gtdb_species": "s__Rhodanobacter sp014200755", "ani": 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