{ "type": "genome", "identifier": "GCA_903906235.1", "organism": "uncultured Campylobacterales bacterium", "title": "uncultured Campylobacterales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903906235.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6953389", "wgs_master": "CAIVJK000000000.1", "refseq_category": "na", "taxid": "352960", "species_taxid": "352960", "organism_name": "uncultured Campylobacterales bacterium", "infraspecific_name": "", "isolate": "MJ110802A_bin-617", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/18", "asm_name": "freshwater MAG --- MJ110802A_bin-617", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/906/235/GCA_903906235.1_freshwater_MAG_---_MJ110802A_bin-617", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-18", "dateModified": "2020-07-18", "datePublished": "2020-07-18", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Campylobacterales bacterium" ], "sample_taxid": [ "352960" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "0.560 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 578.0, "max": 578.0 }, "completeness": 95.83, "contamination": 6.71, "strain_heterogeneity": 66.67, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1962370", "Number of Sequences": "485", "Longest Sequences (bp)": "19673", "N50 (bp)": "4875", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.0", "Number of CDSs": "1560", "Average Protein Length": "276.7", "Coding Ratio (%)": "66.0", "Number of rRNAs": "0", "Number of tRNAs": "32", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sulfurimonas paralvinellae", "strain": "strain=GO25", "accession": "GCA_014905135.1", "taxid": 317658, "species_taxid": 317658, "relation_to_type": "type", "validated": true, "ani": 77.5893, "matched_fragments": 55, "total_fragments": 388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurimonas autotrophica", "strain": "strain=DSM 16294", "accession": "GCA_000147355.1", "taxid": 202747, "species_taxid": 202747, "relation_to_type": "type", "validated": true, "ani": 77.4358, "matched_fragments": 72, "total_fragments": 388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurimonas gotlandica", "strain": "strain=GD 1", "accession": "GCA_000156095.1", "taxid": 1176482, "species_taxid": 1176482, "relation_to_type": "type", "validated": true, "ani": 77.4006, "matched_fragments": 66, "total_fragments": 388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurimonas gotlandica", "strain": "strain=GD1", "accession": "GCA_000242915.2", "taxid": 1176482, "species_taxid": 1176482, "relation_to_type": "type", "validated": true, "ani": 77.3457, "matched_fragments": 65, "total_fragments": 388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Candidatus Sulfurimonas baltica", "strain": "strain=GD2", "accession": "GCA_015265455.1", "taxid": 2740404, "species_taxid": 2740404, "relation_to_type": "type", "validated": true, "ani": 77.2514, "matched_fragments": 66, "total_fragments": 388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurimonas xiamenensis", "strain": "strain=1-1N", "accession": "GCA_009258045.1", "taxid": 2590021, "species_taxid": 2590021, "relation_to_type": "type", "validated": true, "ani": 77.2245, "matched_fragments": 64, "total_fragments": 388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurimonas indica", "strain": "strain=NW8N", "accession": "GCA_009192995.1", "taxid": 2508707, "species_taxid": 2508707, "relation_to_type": "type", "validated": true, "ani": 77.1471, "matched_fragments": 77, "total_fragments": 388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Candidatus Sulfurimonas marisnigri", "strain": "strain=SoZ1", "accession": "GCA_015265475.1", "taxid": 2740405, "species_taxid": 2740405, "relation_to_type": "type", "validated": true, "ani": 77.0017, "matched_fragments": 60, "total_fragments": 388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurimonas hongkongensis", "strain": "strain=AST-10", "accession": "GCA_000445475.1", "taxid": 1172190, "species_taxid": 1172190, "relation_to_type": "type", "validated": true, "ani": 76.7265, "matched_fragments": 67, "total_fragments": 388, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 6.71, "strain_heterogeneity": 66.67 }, "gtdb_result": [ { "accession": "GCA_903885085.1", "gtdb_species": "s__CAITKP01 sp903885085", "ani": 99.1301, "matched_fragments": 350, "total_fragments": 388, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurimonadaceae;g__CAITKP01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.50", "min_intra_species_ani": "98.51", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.85", "num_clustered_genomes": 21, "status": "conclusive" }, { "accession": "GCA_903892995.1", "gtdb_species": "s__CAITKP01 sp903892995", "ani": 81.4457, "matched_fragments": 253, "total_fragments": 388, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurimonadaceae;g__CAITKP01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.47", "min_intra_species_ani": "98.97", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_018824305.1", "gtdb_species": "s__CAITKP01 sp018824305", "ani": 79.2141, "matched_fragments": 179, "total_fragments": 388, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurimonadaceae;g__CAITKP01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_001829625.1", "gtdb_species": "s__Sulfurimonas sp001829625", "ani": 77.8826, "matched_fragments": 66, 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