{ "type": "genome", "identifier": "GCA_903906445.1", "organism": "uncultured Holophagaceae bacterium", "title": "uncultured Holophagaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903906445.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6954656", "wgs_master": "CAIVKG000000000.1", "refseq_category": "na", "taxid": "904990", "species_taxid": "904990", "organism_name": "uncultured Holophagaceae bacterium", "infraspecific_name": "", "isolate": "YR_bin-0628", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/19", "asm_name": "freshwater MAG --- YR_bin-0628", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/906/445/GCA_903906445.1_freshwater_MAG_---_YR_bin-0628", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-19", "dateModified": "2020-07-19", "datePublished": "2020-07-19", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Holophagaceae bacterium" ], "sample_taxid": [ "904990" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "1.063 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 82.91, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3826069", "Number of Sequences": "229", "Longest Sequences (bp)": "156114", "N50 (bp)": "30893", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.7", "Number of CDSs": "3260", "Average Protein Length": "342.3", "Coding Ratio (%)": "87.5", "Number of rRNAs": "0", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Geothrix fermentans", "strain": "strain=DSM 14018", "accession": "GCA_000428885.1", "taxid": 44676, "species_taxid": 44676, "relation_to_type": "type", "validated": true, "ani": 83.0884, "matched_fragments": 653, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Holophaga foetida", "strain": "strain=DSM 6591", "accession": "GCA_000242615.3", "taxid": 35839, "species_taxid": 35839, "relation_to_type": "type", "validated": true, "ani": 78.2568, "matched_fragments": 258, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospira oryzae", "strain": "strain=DSM 21223", "accession": "GCA_004217225.1", "taxid": 146939, "species_taxid": 146939, "relation_to_type": "type", "validated": true, "ani": 75.5468, "matched_fragments": 75, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Inmirania thermothiophila", "strain": "strain=DSM 100275", "accession": "GCA_003751635.1", "taxid": 1750597, "species_taxid": 1750597, "relation_to_type": "type", "validated": true, "ani": 75.4792, "matched_fragments": 52, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio sulfidiphilus", "strain": "strain=HL-EbGR7", "accession": "GCA_000021985.1", "taxid": 1033854, "species_taxid": 1033854, "relation_to_type": "type", "validated": true, "ani": 75.4783, "matched_fragments": 51, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus sicarius", "strain": "strain=CA040B", "accession": "GCA_003611735.1", "taxid": 2316726, "species_taxid": 2316726, "relation_to_type": "type", "validated": true, "ani": 75.2863, "matched_fragments": 100, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter aquaticus", "strain": "strain=LMG 30558", "accession": "GCA_015159745.1", "taxid": 2780094, "species_taxid": 2780094, "relation_to_type": "type", "validated": true, "ani": 75.1807, "matched_fragments": 77, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus carmarthensis", "strain": "strain=CA043D", "accession": "GCA_003611695.1", "taxid": 2316728, "species_taxid": 2316728, "relation_to_type": "type", "validated": true, "ani": 75.1617, "matched_fragments": 110, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stigmatella erecta", 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