{ "type": "genome", "identifier": "GCA_903907655.1", "organism": "Akkermansiaceae bacterium", "title": "Akkermansiaceae bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903907655.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6949729", "wgs_master": "CAIVOZ000000000.1", "refseq_category": "na", "taxid": "2562705", "species_taxid": "2562705", "organism_name": "Akkermansiaceae bacterium", "infraspecific_name": "", "isolate": "AM-lipid-01-D8_bin-0153", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/19", "asm_name": "freshwater MAG --- AM-lipid-01-D8_bin-0153", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/907/655/GCA_903907655.1_freshwater_MAG_---_AM-lipid-01-D8_bin-0153", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-19", "dateModified": "2020-07-19", "datePublished": "2020-07-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Akkermansiaceae bacterium" ], "sample_taxid": [ "2562705" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "0.889 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 47.0, "max": 47.0 }, "completeness": 39.36, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3075033", "Number of Sequences": "1252", "Longest Sequences (bp)": "8695", "N50 (bp)": "2496", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.2", "Number of CDSs": "1265", "Average Protein Length": "281.9", "Coding Ratio (%)": "34.8", "Number of rRNAs": "0", "Number of tRNAs": "21", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 39.36, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903827375.1", "gtdb_species": "s__Luteolibacter sp903827375", "ani": 98.839, "matched_fragments": 250, "total_fragments": 274, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Luteolibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.41", "min_intra_species_ani": "99.23", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.81", "num_clustered_genomes": 16, "status": "conclusive" }, { "accession": "GCA_903875675.1", "gtdb_species": "s__Luteolibacter sp903875675", "ani": 90.3074, "matched_fragments": 200, "total_fragments": 274, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Luteolibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_008932955.1", "gtdb_species": "s__Luteolibacter sp008932955", "ani": 80.0727, "matched_fragments": 76, "total_fragments": 274, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Luteolibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903908495.1", "gtdb_species": "s__Luteolibacter sp903908495", "ani": 79.8519, "matched_fragments": 124, "total_fragments": 274, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Luteolibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903826205.1", "gtdb_species": "s__Luteolibacter sp903826205", "ani": 78.4582, "matched_fragments": 91, "total_fragments": 274, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Luteolibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.67", "min_intra_species_ani": "99.65", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_903934285.1", "gtdb_species": "s__Luteolibacter sp903934285", "ani": 78.3691, "matched_fragments": 86, "total_fragments": 274, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Luteolibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.86", "min_intra_species_ani": "99.86", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.222, "cell_length": null, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": null, "genome_size": 2880686.548, "gc_content": 56.683, "coding_genes": 2373.375, "rRNA16S_genes": 3.0, "tRNA_genes": 50.5, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 1.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Verrucomicrobiota", "c__Verrucomicrobiae", "o__Verrucomicrobiales", "f__Akkermansiaceae", "g__Luteolibacter", "s__Luteolibacter sp903827375" ], "_genome_taxon": [ "Akkermansiaceae", "bacterium", "d__Bacteria", "p__Verrucomicrobiota", "c__Verrucomicrobiae", "o__Verrucomicrobiales", "f__Akkermansiaceae", "g__Luteolibacter", "s__Luteolibacter sp903827375", "Bacteria", "Verrucomicrobiota", "Verrucomicrobiae", "Verrucomicrobiales", "Akkermansiaceae", "Luteolibacter", "Luteolibacter", "sp903827375" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }