{ "type": "genome", "identifier": "GCA_903907685.1", "organism": "uncultured Planctomycetaceae bacterium", "title": "uncultured Planctomycetaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903907685.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6950378", "wgs_master": "CAIVPA000000000.1", "refseq_category": "na", "taxid": "100233", "species_taxid": "100233", "organism_name": "uncultured Planctomycetaceae bacterium", "infraspecific_name": "", "isolate": "LaPlata-5m-b_bin-412", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/20", "asm_name": "freshwater MAG --- LaPlata-5m-b_bin-412", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/907/685/GCA_903907685.1_freshwater_MAG_---_LaPlata-5m-b_bin-412", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-20", "dateModified": "2020-07-20", "datePublished": "2020-07-20", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Planctomycetaceae bacterium" ], "sample_taxid": [ "100233" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Puerto Rico" ], "sample_host_location_id": [], "data_size": "1.458 MB", "sample_ph_range": { "min": 823.0, "max": 823.0 }, "sample_temperature_range": { "min": 2976.0, "max": 2976.0 }, "completeness": 52.08, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5174074", "Number of Sequences": "433", "Longest Sequences (bp)": "112533", "N50 (bp)": "22745", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.5", "Number of CDSs": "3508", "Average Protein Length": "390.3", "Coding Ratio (%)": "79.4", "Number of rRNAs": "0", "Number of tRNAs": "27", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 52.08, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903896675.1", "gtdb_species": "s__SXXK01 sp903896675", "ani": 99.6296, "matched_fragments": 1300, "total_fragments": 1497, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Planctomycetales;f__Planctomycetaceae;g__SXXK01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.51", "min_intra_species_ani": "99.43", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.84", "num_clustered_genomes": 7, "status": "conclusive" }, { "accession": "GCA_005791255.1", "gtdb_species": "s__SXXK01 sp005791255", "ani": 86.3901, "matched_fragments": 1146, "total_fragments": 1497, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Planctomycetales;f__Planctomycetaceae;g__SXXK01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.10", "min_intra_species_ani": "98.10", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903858815.1", "gtdb_species": "s__SXXK01 sp903858815", "ani": 79.7569, "matched_fragments": 855, "total_fragments": 1497, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Planctomycetales;f__Planctomycetaceae;g__SXXK01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.79", "min_intra_species_ani": "99.79", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903924405.1", "gtdb_species": "s__SXXK01 sp903924405", "ani": 76.315, "matched_fragments": 249, "total_fragments": 1497, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Planctomycetales;f__Planctomycetaceae;g__SXXK01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.71", "min_intra_species_ani": "99.71", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903871805.1", "gtdb_species": "s__SXXK01 sp903871805", "ani": 76.2712, "matched_fragments": 197, "total_fragments": 1497, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Planctomycetales;f__Planctomycetaceae;g__SXXK01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.56", "min_intra_species_ani": "99.46", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_016795145.1", "gtdb_species": "s__SXXK01 sp016795145", "ani": 76.0609, "matched_fragments": 121, "total_fragments": 1497, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Planctomycetales;f__Planctomycetaceae;g__SXXK01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017859815.1", "gtdb_species": "s__SXXK01 sp017859815", "ani": 75.6932, "matched_fragments": 72, "total_fragments": 1497, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Planctomycetales;f__Planctomycetaceae;g__SXXK01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003670925.1", "gtdb_species": "s__SXXK01 sp003670925", 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"total_fragments": 1497, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Planctomycetales;f__Planctomycetaceae;g__F1-80-MAGs062", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.007, "cell_length": 0.054, "doubling_h": 1.056, "growth_tmp": 27.45, "optimum_tmp": 27.449, "optimum_ph": 6.766, "genome_size": 6959115.728, "gc_content": 55.598, "coding_genes": 5253.416, "rRNA16S_genes": 1.571, "tRNA_genes": 54.166, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 1.0, "facultative_respiration": 0.083, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.916, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.666, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.333, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Planctomycetota", "c__Planctomycetia", "o__Planctomycetales", "f__Planctomycetaceae", "g__SXXK01", "s__SXXK01 sp903896675" ], "_genome_taxon": [ "uncultured", "Planctomycetaceae", "bacterium", "d__Bacteria", "p__Planctomycetota", "c__Planctomycetia", "o__Planctomycetales", "f__Planctomycetaceae", "g__SXXK01", "s__SXXK01 sp903896675", "Bacteria", "Planctomycetota", "Planctomycetia", "Planctomycetales", "Planctomycetaceae", "SXXK01", "SXXK01", "sp903896675" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }