{ "type": "genome", "identifier": "GCA_903907905.1", "organism": "uncultured bacterium", "title": "uncultured bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903907905.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6952440", "wgs_master": "CAIVPX000000000.1", "refseq_category": "na", "taxid": "77133", "species_taxid": "77133", "organism_name": "uncultured bacterium", "infraspecific_name": "", "isolate": "ErkenSummer_bin-2939", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/19", "asm_name": "freshwater MAG --- ErkenSummer_bin-2939", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/907/905/GCA_903907905.1_freshwater_MAG_---_ErkenSummer_bin-2939", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-19", "dateModified": "2020-07-19", "datePublished": "2020-07-19", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured bacterium" ], "sample_taxid": [ "77133" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "1.237 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 62.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4426900", "Number of Sequences": "190", "Longest Sequences (bp)": "184726", "N50 (bp)": "46890", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.1", "Number of CDSs": "3626", "Average Protein Length": "337.2", "Coding Ratio (%)": "82.9", "Number of rRNAs": "0", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pusillimonas caeni", "strain": "strain=KCTC 42353", "accession": "GCA_003545815.1", "taxid": 1348472, "species_taxid": 1348472, "relation_to_type": "type", "validated": true, "ani": 76.6361, "matched_fragments": 104, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pusillimonas noertemannii", "strain": "strain=DSM 10065", "accession": "GCA_003545825.1", "taxid": 305977, "species_taxid": 305977, "relation_to_type": "type", "validated": true, "ani": 76.6175, "matched_fragments": 94, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella pertussis", "strain": "strain=18323", "accession": "GCA_000306945.1", "taxid": 520, "species_taxid": 520, "relation_to_type": "type", "validated": true, "ani": 76.5407, "matched_fragments": 135, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella parapertussis", "strain": "strain=FDAARGOS_1541", "accession": "GCA_020735925.1", "taxid": 519, "species_taxid": 519, "relation_to_type": "suspected-type", "validated": true, "ani": 76.5306, "matched_fragments": 146, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lautropia mirabilis", "strain": "strain=ATCC 51599", "accession": "GCA_000186425.1", "taxid": 47671, "species_taxid": 47671, "relation_to_type": "type", "validated": true, "ani": 76.3987, "matched_fragments": 105, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lautropia mirabilis", "strain": "strain=NCTC12852", "accession": "GCA_900637555.1", "taxid": 47671, "species_taxid": 47671, "relation_to_type": "type", "validated": true, "ani": 76.3269, "matched_fragments": 112, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella pseudohinzii", "strain": "strain=8-296-03", "accession": "GCA_000657795.2", "taxid": 1331258, "species_taxid": 1331258, "relation_to_type": "type", "validated": true, "ani": 76.248, "matched_fragments": 146, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Candidimonas nitroreducens", "strain": "strain=SC-089", "accession": "GCA_002209565.1", "taxid": 683354, "species_taxid": 683354, "relation_to_type": "type", "validated": true, "ani": 76.2409, "matched_fragments": 113, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lautropia dentalis", "strain": "strain=KCOM 2505", "accession": "GCA_003892345.1", "taxid": 2490857, "species_taxid": 2490857, "relation_to_type": "type", "validated": true, "ani": 76.2354, "matched_fragments": 99, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus hippei", "strain": "strain=DSM 566", "accession": "GCA_003201595.1", "taxid": 744406, "species_taxid": 744406, "relation_to_type": "type", "validated": true, "ani": 76.2346, "matched_fragments": 164, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella hinzii", "strain": "strain=LMG 13501", "accession": "GCA_001548475.1", "taxid": 103855, "species_taxid": 103855, "relation_to_type": "type", "validated": true, "ani": 76.1587, "matched_fragments": 140, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella hinzii", "strain": "strain=NCTC13199", "accession": "GCA_900637615.1", "taxid": 103855, "species_taxid": 103855, "relation_to_type": "type", "validated": true, "ani": 76.15, "matched_fragments": 144, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus sulfidivorans", "strain": "strain=D-501", "accession": "GCA_013426975.1", "taxid": 639200, "species_taxid": 639200, "relation_to_type": "type", "validated": true, "ani": 76.1268, "matched_fragments": 150, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Verticiella sediminum", "strain": "strain=DSM 27279", "accession": "GCA_007558815.1", "taxid": 1247510, "species_taxid": 1247510, "relation_to_type": "type", "validated": true, "ani": 76.1043, "matched_fragments": 175, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pigmentiphaga kullae", "strain": "strain=K24", "accession": "GCA_004216695.1", "taxid": 151784, "species_taxid": 151784, "relation_to_type": "type", "validated": true, "ani": 76.0585, "matched_fragments": 181, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Candidimonas humi", "strain": "strain=DSM 25336", "accession": "GCA_019166065.1", "taxid": 683355, "species_taxid": 683355, "relation_to_type": "type", "validated": true, "ani": 76.054, "matched_fragments": 122, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum humi", "strain": "strain=U15", "accession": "GCA_900188095.1", "taxid": 1688639, "species_taxid": 1688639, "relation_to_type": "type", "validated": true, "ani": 76.0487, "matched_fragments": 156, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax oryzae", "strain": "strain=ATCC 19882", "accession": "GCA_000687165.1", "taxid": 862720, "species_taxid": 862720, "relation_to_type": "type", "validated": true, "ani": 76.0483, "matched_fragments": 147, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax avenae subsp. avenae", "strain": "strain=ATCC 19860", "accession": "GCA_000176855.2", "taxid": 80870, "species_taxid": 80867, "relation_to_type": "suspected-type", "validated": true, "ani": 75.9796, "matched_fragments": 154, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Derxia lacustris", "strain": "strain=HL-12", "accession": "GCA_002105195.1", "taxid": 764842, "species_taxid": 764842, "relation_to_type": "type", "validated": true, "ani": 75.9764, "matched_fragments": 171, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia eurypsychrophila", "strain": "strain=JCM 30074", "accession": "GCA_002760655.1", "taxid": 1485217, "species_taxid": 1485217, "relation_to_type": "type", "validated": true, "ani": 75.8749, "matched_fragments": 140, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella namucuonensis", "strain": "strain=CGMCC 1.11014", "accession": "GCA_900116645.1", "taxid": 1035707, "species_taxid": 1035707, "relation_to_type": "type", "validated": true, "ani": 75.8466, "matched_fragments": 183, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Diaphorobacter aerolatus", "strain": "strain=KACC 16536", "accession": "GCA_014489535.1", "taxid": 1288495, "species_taxid": 1288495, "relation_to_type": "type", "validated": true, "ani": 75.8218, "matched_fragments": 86, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia pseudomultivorans", "strain": "", "accession": "GCA_902499075.1", "taxid": 1207504, "species_taxid": 1207504, "relation_to_type": "suspected-type", "validated": true, "ani": 75.7855, "matched_fragments": 131, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia plantarii", "strain": "strain=ATCC 43733", "accession": "GCA_001411805.1", "taxid": 41899, "species_taxid": 41899, "relation_to_type": "type", "validated": true, "ani": 75.7387, "matched_fragments": 178, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia plantarii", "strain": "strain=LMG 9035", "accession": "GCA_902832905.1", "taxid": 41899, "species_taxid": 41899, "relation_to_type": "type", "validated": true, "ani": 75.713, "matched_fragments": 180, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Duganella radicis", "strain": "strain=KCTC 22382", "accession": "GCA_009720825.1", "taxid": 551988, "species_taxid": 551988, "relation_to_type": "type", "validated": true, "ani": 75.7052, "matched_fragments": 115, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella dura", "strain": "strain=DSM 17513", "accession": "GCA_009727155.1", "taxid": 321982, 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012513825.1", "gtdb_species": "s__SCN-69-89 sp012513825", "ani": 76.6455, "matched_fragments": 173, "total_fragments": 1381, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__SCN-69-89", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903644065.1", "gtdb_species": "s__CAHJXF01 sp903644065", "ani": 76.1625, "matched_fragments": 117, "total_fragments": 1381, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__CAHJXF01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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