{ "type": "genome", "identifier": "GCA_903907995.1", "organism": "uncultured Verrucomicrobiota bacterium", "title": "uncultured Verrucomicrobiota bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903907995.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6955912", "wgs_master": "CAIVQH000000000.1", "refseq_category": "na", "taxid": "156588", "species_taxid": "156588", "organism_name": "uncultured Verrucomicrobiota bacterium", "infraspecific_name": "", "isolate": "Umea2_bin-2232", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/20", "asm_name": "freshwater MAG --- Umea2_bin-2232", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/907/995/GCA_903907995.1_freshwater_MAG_---_Umea2_bin-2232", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-20", "dateModified": "2020-07-20", "datePublished": "2020-07-20", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Verrucomicrobiota bacterium" ], "sample_taxid": [ "156588" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "1.431 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5109158", "Number of Sequences": "60", "Longest Sequences (bp)": "478912", "N50 (bp)": "144812", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.0", "Number of CDSs": "4193", "Average Protein Length": "359.4", "Coding Ratio (%)": "88.5", "Number of rRNAs": "2", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ruficoccus amylovorans", "strain": "strain=JCM31066", "accession": "GCA_014230085.1", "taxid": 1804625, "species_taxid": 1804625, "relation_to_type": "type", "validated": true, "ani": 76.2375, "matched_fragments": 51, "total_fragments": 1675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limisphaera ngatamarikiensis", "strain": "strain=NGM72.4", "accession": "GCA_011044775.1", "taxid": 1324935, "species_taxid": 1324935, "relation_to_type": "type", "validated": true, "ani": 76.0406, "matched_fragments": 68, "total_fragments": 1675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ereboglobus luteus", "strain": "strain=Ho45", "accession": "GCA_003096195.1", "taxid": 1796921, "species_taxid": 1796921, "relation_to_type": "type", "validated": true, "ani": 76.0189, "matched_fragments": 52, "total_fragments": 1675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Opitutus terrae", "strain": "strain=PB90-1", "accession": "GCA_000019965.1", "taxid": 107709, "species_taxid": 107709, "relation_to_type": "type", "validated": true, "ani": 75.9518, "matched_fragments": 80, "total_fragments": 1675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium symbiodeficiens", "strain": "strain=85S1MB", "accession": "GCA_002266465.2", "taxid": 1404367, "species_taxid": 1404367, "relation_to_type": "type", "validated": true, "ani": 75.4502, "matched_fragments": 59, "total_fragments": 1675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium frederickii", "strain": "strain=CNPSo 3426", "accession": "GCA_004570865.1", "taxid": 2560054, "species_taxid": 2560054, "relation_to_type": "type", "validated": true, "ani": 75.39, "matched_fragments": 72, "total_fragments": 1675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax avenae subsp. avenae", "strain": "strain=ATCC 19860", "accession": "GCA_000176855.2", "taxid": 80870, "species_taxid": 80867, "relation_to_type": "suspected-type", "validated": true, "ani": 75.3078, "matched_fragments": 75, "total_fragments": 1675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas composti", "strain": "strain=TR7-09", "accession": "GCA_000747175.1", "taxid": 370776, "species_taxid": 370776, "relation_to_type": "type", "validated": true, "ani": 75.0678, "matched_fragments": 71, "total_fragments": 1675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylorubrum zatmanii", "strain": "strain=LMG 6087", "accession": "GCA_014845115.1", "taxid": 29429, "species_taxid": 29429, "relation_to_type": "type", "validated": true, "ani": 75.0654, "matched_fragments": 60, "total_fragments": 1675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas composti", "strain": "strain=DSM 18010", "accession": "GCA_000426365.1", "taxid": 370776, "species_taxid": 370776, "relation_to_type": "type", "validated": true, "ani": 75.0627, "matched_fragments": 72, "total_fragments": 1675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Variovorax gossypii", "strain": "strain=DSM 100435", "accession": "GCA_003965815.1", "taxid": 1679495, "species_taxid": 1679495, "relation_to_type": "type", "validated": true, "ani": 74.9862, "matched_fragments": 87, "total_fragments": 1675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Variovorax guangxiensis", "strain": "strain=DSM 27352", "accession": "GCA_003952165.1", "taxid": 1775474, "species_taxid": 1775474, "relation_to_type": "type", "validated": true, "ani": 74.9254, "matched_fragments": 95, "total_fragments": 1675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia ubonensis subsp. mesacidophila", "strain": "strain=ATCC 31433", "accession": "GCA_002097715.1", "taxid": 265293, "species_taxid": 101571, "relation_to_type": "type", "validated": true, "ani": 74.8745, "matched_fragments": 73, "total_fragments": 1675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia ubonensis subsp. mesacidophila", "strain": "strain=ATCC 31433", "accession": "GCA_002362295.1", "taxid": 265293, "species_taxid": 101571, "relation_to_type": "type", "validated": true, "ani": 74.86, "matched_fragments": 72, "total_fragments": 1675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Euzebya pacifica", "strain": "strain=DY32-46", "accession": 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