{ "type": "genome", "identifier": "GCA_903908085.1", "organism": "uncultured Verrucomicrobiota bacterium", "title": "uncultured Verrucomicrobiota bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903908085.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6956773", "wgs_master": "CAIVQP000000000.1", "refseq_category": "na", "taxid": "156588", "species_taxid": "156588", "organism_name": "uncultured Verrucomicrobiota bacterium", "infraspecific_name": "", "isolate": "LJ_bin-0188", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/18", "asm_name": "freshwater MAG --- LJ_bin-0188", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/908/085/GCA_903908085.1_freshwater_MAG_---_LJ_bin-0188", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-18", "dateModified": "2020-07-18", "datePublished": "2020-07-18", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Verrucomicrobiota bacterium" ], "sample_taxid": [ "156588" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "0.799 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.63, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2777997", "Number of Sequences": "241", "Longest Sequences (bp)": "69794", "N50 (bp)": "18391", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.9", "Number of CDSs": "2169", "Average Protein Length": "342.9", "Coding Ratio (%)": "80.3", "Number of rRNAs": "1", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 100.0, "contamination": 4.63, "strain_heterogeneity": 50.0 }, "gtdb_result": [ { "accession": "GCA_903856725.1", "gtdb_species": "s__Lacunisphaera sp903856725", "ani": 99.4352, "matched_fragments": 745, "total_fragments": 802, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Lacunisphaera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.44", "min_intra_species_ani": "98.84", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", 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"cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Verrucomicrobiota", "c__Verrucomicrobiae", "o__Opitutales", "f__Opitutaceae", "g__Lacunisphaera", "s__Lacunisphaera sp903856725" ], "_genome_taxon": [ "uncultured", "Verrucomicrobiota", "bacterium", "d__Bacteria", "p__Verrucomicrobiota", "c__Verrucomicrobiae", "o__Opitutales", "f__Opitutaceae", "g__Lacunisphaera", "s__Lacunisphaera sp903856725", "Bacteria", "Verrucomicrobiota", "Verrucomicrobiae", "Opitutales", "Opitutaceae", "Lacunisphaera", "Lacunisphaera", "sp903856725" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }