{ "type": "genome", "identifier": "GCA_903908875.1", "organism": "uncultured Geobacteraceae bacterium", "title": "uncultured Geobacteraceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903908875.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6946623", "wgs_master": "CAIVTQ000000000.1", "refseq_category": "na", "taxid": "214033", "species_taxid": "214033", "organism_name": "uncultured Geobacteraceae bacterium", "infraspecific_name": "", "isolate": "Day6-5_bin-209", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/19", "asm_name": "freshwater MAG --- Day6-5_bin-209", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/908/875/GCA_903908875.1_freshwater_MAG_---_Day6-5_bin-209", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-19", "dateModified": "2020-07-19", "datePublished": "2020-07-19", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Geobacteraceae bacterium" ], "sample_taxid": [ "214033" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "1.036 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 32.0, "max": 32.0 }, "completeness": 54.86, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3561655", "Number of Sequences": "1269", "Longest Sequences (bp)": "23382", "N50 (bp)": "2867", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "51.1", "Number of CDSs": "2335", "Average Protein Length": "254.6", "Coding Ratio (%)": "50.1", "Number of rRNAs": "0", "Number of tRNAs": "16", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 54.86, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_013349405.1", "gtdb_species": "s__JACRCG01 sp013349405", "ani": 83.5051, "matched_fragments": 210, "total_fragments": 440, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Pseudopelobacteraceae;g__JACRCG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903939115.1", "gtdb_species": "s__JACRCG01 sp903939115", "ani": 82.1402, "matched_fragments": 230, "total_fragments": 440, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Pseudopelobacteraceae;g__JACRCG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.87", "min_intra_species_ani": "99.82", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.94", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCA_903845365.1", "gtdb_species": "s__JACRCG01 sp903845365", "ani": 80.8215, "matched_fragments": 189, "total_fragments": 440, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Pseudopelobacteraceae;g__JACRCG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.34", "min_intra_species_ani": "97.69", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.80", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_009886055.1", "gtdb_species": "s__JACRCG01 sp009886055", "ani": 78.5728, "matched_fragments": 114, "total_fragments": 440, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Pseudopelobacteraceae;g__JACRCG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903925005.1", "gtdb_species": "s__JACRCG01 sp903925005", "ani": 78.1634, "matched_fragments": 87, "total_fragments": 440, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Pseudopelobacteraceae;g__JACRCG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.76", "min_intra_species_ani": "99.70", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_009885845.1", "gtdb_species": "s__JACRCG01 sp009885845", "ani": 78.1358, "matched_fragments": 94, "total_fragments": 440, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Pseudopelobacteraceae;g__JACRCG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019162745.1", "gtdb_species": "s__JACRCG01 sp019162745", "ani": 78.1226, "matched_fragments": 96, "total_fragments": 440, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Pseudopelobacteraceae;g__JACRCG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 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"g__JACRCG01", "s__", "Bacteria", "Desulfobacterota", "Desulfuromonadia", "Geobacterales", "Pseudopelobacteraceae", "JACRCG01", "s", "", "" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }