{ "type": "genome", "identifier": "GCA_903910005.1", "organism": "uncultured Methylococcaceae bacterium", "title": "uncultured Methylococcaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903910005.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6956099", "wgs_master": "CAIVXW000000000.1", "refseq_category": "na", "taxid": "181674", "species_taxid": "181674", "organism_name": "uncultured Methylococcaceae bacterium", "infraspecific_name": "", "isolate": "LaPlata-a_bin-1612", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/19", "asm_name": "freshwater MAG --- LaPlata-a_bin-1612", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/910/005/GCA_903910005.1_freshwater_MAG_---_LaPlata-a_bin-1612", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-19", "dateModified": "2020-07-19", "datePublished": "2020-07-19", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Methylococcaceae bacterium" ], "sample_taxid": [ "181674" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Puerto Rico" ], "sample_host_location_id": [], "data_size": "0.840 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.62, "contamination": 0.46, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2958621", "Number of Sequences": "511", "Longest Sequences (bp)": "41255", "N50 (bp)": "7449", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.9", "Number of CDSs": "2201", "Average Protein Length": "327.7", "Coding Ratio (%)": "73.1", "Number of rRNAs": "1", "Number of tRNAs": "31", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methylomagnum ishizawai", "strain": "strain=RS11D-Pr", "accession": "GCA_019670005.1", "taxid": 1760988, "species_taxid": 1760988, "relation_to_type": "type", "validated": true, "ani": 76.3232, "matched_fragments": 97, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methyloterricola oryzae", "strain": "strain=73a", "accession": "GCA_000934725.1", "taxid": 1495050, "species_taxid": 1495050, "relation_to_type": "type", "validated": true, "ani": 76.1029, "matched_fragments": 57, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylocaldum marinum", "strain": "strain=S8", "accession": "GCA_003584645.1", "taxid": 1432792, "species_taxid": 1432792, "relation_to_type": "type", "validated": true, "ani": 75.8608, "matched_fragments": 51, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.62, "contamination": 0.46, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_903910005.1", "gtdb_species": "s__CAIVXW01 sp903910005", "ani": 100.0, "matched_fragments": 705, "total_fragments": 717, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylococcaceae;g__CAIVXW01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.02", "min_intra_species_ani": "99.02", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_902810705.1", "gtdb_species": "s__CADDYU01 sp902810705", "ani": 76.6512, "matched_fragments": 56, "total_fragments": 717, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylococcaceae;g__CADDYU01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016925495.1", "gtdb_species": "s__EFPC2 sp016925495", "ani": 76.5363, "matched_fragments": 71, "total_fragments": 717, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylococcaceae;g__EFPC2", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900155475.1", "gtdb_species": "s__Methylomagnum ishizawai", "ani": 76.4851, "matched_fragments": 91, "total_fragments": 717, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylococcaceae;g__Methylomagnum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012026715.1", "gtdb_species": "s__VEPB01 sp012026715", "ani": 76.29, "matched_fragments": 54, "total_fragments": 717, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylococcaceae;g__VEPB01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016106025.1", "gtdb_species": "s__Methylococcus sp016106025", "ani": 76.2104, 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"Gammaproteobacteria", "Methylococcales", "Methylococcaceae", "CAIVXW01", "CAIVXW01", "sp903910005" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }