{ "type": "genome", "identifier": "GCA_903910205.1", "organism": "uncultured Methylococcaceae bacterium", "title": "uncultured Methylococcaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BILS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_903910205.1", "bioproject": "PRJEB38681", "biosample": "SAMEA6949222", "wgs_master": "CAIVYW000000000.1", "refseq_category": "na", "taxid": "181674", "species_taxid": "181674", "organism_name": "uncultured Methylococcaceae bacterium", "infraspecific_name": "", "isolate": "MJ110516B_bin-0860", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/19", "asm_name": "freshwater MAG --- MJ110516B_bin-0860", "submitter": "BILS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/910/205/GCA_903910205.1_freshwater_MAG_---_MJ110516B_bin-0860", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-19", "dateModified": "2020-07-19", "datePublished": "2020-07-19", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Methylococcaceae bacterium" ], "sample_taxid": [ "181674" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "1.002 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 388.0, "max": 388.0 }, "completeness": 72.3, "contamination": 2.55, "strain_heterogeneity": 60.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3490074", "Number of Sequences": "618", "Longest Sequences (bp)": "55496", "N50 (bp)": "7545", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.0", "Number of CDSs": "2892", "Average Protein Length": "300.5", "Coding Ratio (%)": "74.7", "Number of rRNAs": "0", "Number of tRNAs": "32", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methylobacter tundripaludum", "strain": "strain=SV96", "accession": "GCA_000190755.3", "taxid": 173365, "species_taxid": 173365, "relation_to_type": "type", "validated": true, "ani": 76.2589, "matched_fragments": 101, "total_fragments": 830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crenothrix polyspora", "strain": "", "accession": "GCA_900163755.1", "taxid": 360316, "species_taxid": 360316, "relation_to_type": "reftype", "validated": true, "ani": 76.0719, "matched_fragments": 78, 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119, "total_fragments": 830, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__KS41", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.68", "min_intra_species_ani": "99.39", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 15, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.032, "cell_length": 0.184, "doubling_h": 1.929, "growth_tmp": 26.938, "optimum_tmp": 29.642, "optimum_ph": 7.321, "genome_size": 4860515.519, "gc_content": 53.393, "coding_genes": 4340.777, "rRNA16S_genes": 2.4, "tRNA_genes": 49.75, "gram_stain": 0.0, "sporulation": 0.066, "motility": 0.625, "range_salinity": 0.0, "facultative_respiration": 0.142, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.857, "mesophilic_range_tmp": 0.75, "thermophilic_range_tmp": 0.25, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.687, "coccus_cell_shape": 0.25, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.062, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Methylococcales", "f__Methylomonadaceae", "g__Methylobacter_C", "s__Methylobacter_C sp903910205" ], "_genome_taxon": [ "uncultured", "Methylococcaceae", "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Methylococcales", "f__Methylomonadaceae", "g__Methylobacter_C", "s__Methylobacter_C sp903910205", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Methylococcales", "Methylomonadaceae", "Methylobacter", "C", "Methylobacter", "C", "sp903910205" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }